Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AB8P52_RS09685 Genome accession   NZ_CP166088
Coordinates   1953109..1954479 (-) Length   456 a.a.
NCBI ID   WP_059073752.1    Uniprot ID   A0A7L7KYI9
Organism   Companilactobacillus pabuli strain BD-CP     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1948109..1959479
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8P52_RS09665 (AB8P52_09665) - 1948430..1948843 (-) 414 WP_010018666.1 Mini-ribonuclease 3 -
  AB8P52_RS09670 (AB8P52_09670) cysS 1948836..1950242 (-) 1407 WP_059073754.1 cysteine--tRNA ligase -
  AB8P52_RS09675 (AB8P52_09675) gltX 1950328..1951824 (-) 1497 WP_059073753.1 glutamate--tRNA ligase -
  AB8P52_RS09680 (AB8P52_09680) - 1951805..1953094 (-) 1290 WP_182082574.1 PIN/TRAM domain-containing protein -
  AB8P52_RS09685 (AB8P52_09685) radA 1953109..1954479 (-) 1371 WP_059073752.1 DNA repair protein RadA Machinery gene
  AB8P52_RS09690 (AB8P52_09690) - 1954500..1955042 (-) 543 WP_059073751.1 dUTP diphosphatase -
  AB8P52_RS09695 (AB8P52_09695) - 1955174..1955476 (+) 303 WP_059073750.1 GNAT family N-acetyltransferase -
  AB8P52_RS09700 (AB8P52_09700) rpiA 1955477..1956166 (+) 690 WP_010018658.1 ribose-5-phosphate isomerase RpiA -
  AB8P52_RS09705 (AB8P52_09705) - 1956191..1957534 (+) 1344 WP_369833209.1 aminopeptidase C -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49847.36 Da        Isoelectric Point: 8.0216

>NTDB_id=1033280 AB8P52_RS09685 WP_059073752.1 1953109..1954479(-) (radA) [Companilactobacillus pabuli strain BD-CP]
MAKAKTKFVCQNCGYVSPKYLGRCPNCGVWNQMVEEVDQATVKASVTPSRRVSDLESKPVKIGDVSFEKEPRIKTDMDEL
NRVLGGGIVPGSLILIGGDPGIGKSTLLTQVSGQLQKTGGKVLYVSGEESASQIKMRADRLGIKGDNLYIYPQTDMSYIR
QTIDDMKPDFLIIDSVQTMDEPEISSAVGSISQIREVTAELMNIAKQQNITVFVVGHVTKGGAIAGPKILEHMVDTVLYF
EGDTHHSYRILRSVKNRFGSTNEIGIFEMRTKGLVEVANPSEIFLEERLANANGSAVVVSMEGTRPILVEIQSLITPTVF
GNAKRTATGLDHNRVSVIMAVLEKRGNLMLQNQDAYLKSTGGVKLDEPAIDLALAMSIASSYKNMGIPGTDCFVGEVGLT
GEVRRVNRIDQRVNEAEKLGFKRIFIPKNNLGDWSKNNKIQIIGVSTVSDAMNKIF

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=1033280 AB8P52_RS09685 WP_059073752.1 1953109..1954479(-) (radA) [Companilactobacillus pabuli strain BD-CP]
TTGGCTAAAGCTAAAACAAAATTCGTATGTCAAAATTGTGGTTACGTTTCACCAAAGTATTTAGGTCGTTGTCCTAACTG
TGGCGTTTGGAATCAAATGGTCGAAGAAGTTGATCAAGCAACTGTCAAAGCCAGTGTCACACCTAGTCGTCGTGTCAGTG
ATTTGGAATCTAAACCAGTTAAAATTGGGGATGTCTCTTTTGAAAAAGAACCTCGAATCAAGACTGATATGGATGAATTG
AATCGAGTTCTTGGTGGCGGAATCGTACCGGGTTCTTTGATTTTAATTGGTGGAGATCCGGGAATTGGTAAATCAACGCT
TTTGACTCAAGTTTCAGGACAACTTCAAAAGACCGGTGGCAAGGTTTTGTACGTTTCTGGTGAAGAGAGCGCTTCACAAA
TTAAAATGCGAGCTGATCGTCTAGGCATTAAGGGTGATAACTTGTACATTTACCCACAGACTGATATGAGTTATATTCGT
CAAACCATCGATGATATGAAGCCAGACTTTTTGATTATCGATTCGGTACAAACAATGGATGAACCAGAAATTTCTTCTGC
TGTTGGTAGTATTTCACAAATTCGTGAAGTAACGGCAGAATTGATGAATATCGCTAAACAACAAAATATCACCGTCTTCG
TTGTGGGACATGTGACCAAGGGTGGTGCCATCGCTGGACCAAAGATTTTGGAACACATGGTAGATACAGTTTTGTATTTT
GAAGGTGACACTCATCACAGTTATCGAATCTTACGTTCAGTCAAGAATCGTTTTGGCTCAACTAACGAAATCGGTATTTT
TGAAATGCGAACGAAAGGATTAGTTGAAGTAGCTAATCCTTCGGAGATTTTCTTGGAAGAACGTTTAGCTAATGCCAATG
GTTCTGCGGTGGTAGTTTCAATGGAAGGAACGAGACCAATTTTGGTTGAAATTCAATCTTTGATTACCCCAACTGTTTTT
GGTAATGCTAAGAGAACCGCAACTGGTTTAGATCATAATCGAGTTTCAGTTATTATGGCGGTACTAGAAAAACGTGGTAA
TTTGATGCTCCAAAATCAAGATGCTTATTTGAAATCAACTGGTGGCGTAAAATTGGATGAGCCTGCAATCGATTTGGCTT
TAGCAATGTCAATTGCCTCCAGTTACAAGAATATGGGTATACCTGGAACTGATTGTTTCGTTGGCGAAGTCGGTTTGACC
GGTGAAGTTAGACGAGTCAATAGAATCGATCAACGCGTTAATGAAGCAGAAAAGCTTGGTTTCAAACGAATCTTTATTCC
TAAGAATAATCTTGGTGATTGGTCCAAAAATAATAAGATTCAAATCATCGGTGTCAGTACCGTGTCAGACGCTATGAACA
AAATATTTTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(366-430)

AAA domain (AAA_25)

(58-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7L7KYI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

65.284

100

0.656
  radA Streptococcus pneumoniae D39

65.284

100

0.656
  radA Streptococcus pneumoniae R6

65.284

100

0.656
  radA Streptococcus pneumoniae TIGR4

65.284

100

0.656
  radA Streptococcus mitis NCTC 12261

65.284

100

0.656
  radA Streptococcus mitis SK321

65.284

100

0.656
  radA Bacillus subtilis subsp. subtilis str. 168

62.914

99.342

0.625

Multiple sequence alignment