Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   AB8O67_RS15040 Genome accession   NZ_CP166053
Coordinates   2850200..2850946 (-) Length   248 a.a.
NCBI ID   WP_369888254.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2845200..2855946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS15015 (AB8O67_15015) mreC 2845608..2846480 (-) 873 WP_010335163.1 rod shape-determining protein MreC -
  AB8O67_RS15020 (AB8O67_15020) mreB 2846511..2847524 (-) 1014 WP_010335164.1 cell shape-determining protein MreB -
  AB8O67_RS15025 (AB8O67_15025) radC 2847616..2848311 (-) 696 WP_044154171.1 DNA repair protein RadC -
  AB8O67_RS15030 (AB8O67_15030) - 2848349..2848918 (-) 570 WP_044154168.1 Maf family nucleotide pyrophosphatase -
  AB8O67_RS15035 (AB8O67_15035) - 2849069..2850067 (-) 999 WP_369888253.1 SPOR domain-containing protein -
  AB8O67_RS15040 (AB8O67_15040) comC 2850200..2850946 (-) 747 WP_369888254.1 A24 family peptidase Machinery gene
  AB8O67_RS15045 (AB8O67_15045) - 2851088..2852380 (-) 1293 WP_059293485.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  AB8O67_RS15050 (AB8O67_15050) valS 2852440..2855082 (-) 2643 WP_326139323.1 valine--tRNA ligase -
  AB8O67_RS15055 (AB8O67_15055) - 2855531..2855722 (+) 192 WP_024122364.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26555.13 Da        Isoelectric Point: 9.7865

>NTDB_id=1033216 AB8O67_RS15040 WP_369888254.1 2850200..2850946(-) (comC) [Bacillus halotolerans strain XYK2-4]
MIPILFVLGLILGSFYYTVGCRIPLHISIISPRSACSFCRRTLTPTELIPVLSFILQKGNCKSCGQKLSLMYPAAELSTA
SLFAAAGFRFGLSWELIVALLFLSLLIIVSVTDIHFMLIPNRILLFFLPFLAAGRIISPLLSWYEGFIGAAAGFLLLAFI
AVITHGGIGGGDIKLFAVTGLVLGVKMLAAAFFFSVLIGALYGAAAVLFGRLARKQPLPFAPAIAAGSIFAYLYGDSIIS
FYVKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1033216 AB8O67_RS15040 WP_369888254.1 2850200..2850946(-) (comC) [Bacillus halotolerans strain XYK2-4]
ATGATTCCGATTCTTTTTGTCCTCGGCCTTATCCTCGGTTCATTTTATTATACGGTTGGATGCCGTATCCCCTTGCACAT
ATCCATCATAAGTCCGCGTTCGGCATGTTCTTTTTGCCGTCGAACCCTAACCCCGACGGAATTAATCCCTGTTTTATCTT
TTATTCTGCAAAAAGGCAATTGCAAAAGCTGCGGCCAAAAGCTCTCTCTTATGTACCCGGCGGCAGAGCTCTCGACAGCG
AGTTTATTTGCAGCCGCGGGATTTCGTTTCGGTTTGTCTTGGGAACTGATTGTTGCGTTGCTGTTTCTTTCTCTTCTTAT
TATTGTTTCTGTGACAGATATTCACTTTATGCTGATTCCAAATCGCATATTGCTATTCTTTCTTCCCTTTCTGGCGGCTG
GCAGAATCATTTCTCCGCTTCTTTCTTGGTATGAAGGCTTTATAGGCGCAGCTGCCGGTTTTCTTTTACTGGCCTTTATT
GCCGTCATCACTCATGGAGGAATAGGGGGAGGGGATATTAAATTATTTGCCGTTACCGGCCTTGTGCTTGGTGTAAAAAT
GCTTGCTGCCGCCTTTTTCTTTTCTGTTCTTATAGGCGCATTGTACGGAGCTGCCGCTGTACTGTTCGGAAGGCTGGCCA
GAAAACAGCCGCTTCCCTTTGCACCGGCAATTGCGGCAGGAAGTATTTTCGCTTATTTATACGGTGACTCTATCATTTCC
TTTTATGTCAAAATGGCGTTAGGCTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

81.048

100

0.81

Multiple sequence alignment