Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   AB8O67_RS13340 Genome accession   NZ_CP166053
Coordinates   2543982..2544785 (-) Length   267 a.a.
NCBI ID   WP_010334880.1    Uniprot ID   A0A9Q4HNW6
Organism   Bacillus halotolerans strain XYK2-4     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2538982..2549785
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS13315 (AB8O67_13320) - 2539980..2540723 (-) 744 WP_326139078.1 glycerophosphodiester phosphodiesterase -
  AB8O67_RS13320 (AB8O67_13325) - 2540813..2541433 (-) 621 WP_193659460.1 N-acetylmuramoyl-L-alanine amidase -
  AB8O67_RS13325 (AB8O67_13330) - 2541456..2541749 (-) 294 WP_059335655.1 hypothetical protein -
  AB8O67_RS13330 (AB8O67_13335) - 2542077..2542211 (+) 135 WP_024122000.1 hypothetical protein -
  AB8O67_RS13335 (AB8O67_13340) - 2542284..2543402 (+) 1119 WP_193659461.1 NADH-dependent flavin oxidoreductase -
  AB8O67_RS13340 (AB8O67_13345) spo0A 2543982..2544785 (-) 804 WP_010334880.1 sporulation transcription factor Spo0A Regulator
  AB8O67_RS13345 (AB8O67_13350) spoIVB 2545060..2546337 (-) 1278 WP_059352386.1 SpoIVB peptidase -
  AB8O67_RS13350 (AB8O67_13355) recN 2546512..2548242 (-) 1731 WP_059335399.1 DNA repair protein RecN Machinery gene
  AB8O67_RS13355 (AB8O67_13360) argR 2548278..2548727 (-) 450 WP_010334883.1 arginine repressor ArgR -
  AB8O67_RS13360 (AB8O67_13365) - 2548824..2549669 (-) 846 WP_044154647.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29719.20 Da        Isoelectric Point: 6.3913

>NTDB_id=1033198 AB8O67_RS13340 WP_010334880.1 2543982..2544785(-) (spo0A) [Bacillus halotolerans strain XYK2-4]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1033198 AB8O67_RS13340 WP_010334880.1 2543982..2544785(-) (spo0A) [Bacillus halotolerans strain XYK2-4]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCTGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAACGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGATATTATTATGCCTCATTTGGACGGACTTGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCAC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGATAT
CGAGCTGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCTTTGTTCGGCTATACGGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCAGACAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

99.625

100

0.996

Multiple sequence alignment