Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB8O67_RS12355 Genome accession   NZ_CP166053
Coordinates   2367576..2368196 (+) Length   206 a.a.
NCBI ID   WP_044155259.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2362576..2373196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS12315 (AB8O67_12320) - 2363714..2364220 (-) 507 WP_326139121.1 PTS glucose transporter subunit IIA -
  AB8O67_RS12320 (AB8O67_12325) - 2364357..2364776 (+) 420 WP_326139120.1 Hsp20/alpha crystallin family protein -
  AB8O67_RS12325 (AB8O67_12330) - 2364798..2365172 (-) 375 WP_059352453.1 YppG family protein -
  AB8O67_RS12330 (AB8O67_12335) - 2365360..2365548 (+) 189 WP_044155293.1 YppF family protein -
  AB8O67_RS12335 (AB8O67_12340) - 2365583..2365954 (-) 372 WP_095532787.1 YppE family protein -
  AB8O67_RS12340 (AB8O67_12345) - 2366000..2366245 (-) 246 WP_044155280.1 DUF5446 family protein -
  AB8O67_RS12345 (AB8O67_12350) sspM 2366443..2366547 (+) 105 WP_010334703.1 acid-soluble spore protein SspM -
  AB8O67_RS12350 (AB8O67_12355) - 2366573..2367535 (-) 963 WP_316274349.1 DUF2515 domain-containing protein -
  AB8O67_RS12355 (AB8O67_12360) recU 2367576..2368196 (+) 621 WP_044155259.1 Holliday junction resolvase RecU Machinery gene
  AB8O67_RS12360 (AB8O67_12365) - 2368218..2370962 (+) 2745 WP_215510401.1 PBP1A family penicillin-binding protein -
  AB8O67_RS12365 (AB8O67_12370) - 2371035..2371529 (-) 495 WP_257987552.1 YpoC family protein -
  AB8O67_RS12370 (AB8O67_12375) nth 2371526..2372185 (-) 660 WP_217827723.1 endonuclease III -
  AB8O67_RS12375 (AB8O67_12380) dnaD 2372204..2372902 (-) 699 WP_044155229.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23935.07 Da        Isoelectric Point: 9.6373

>NTDB_id=1033197 AB8O67_RS12355 WP_044155259.1 2367576..2368196(+) (recU) [Bacillus halotolerans strain XYK2-4]
MIRYPNGKTFQPKHPVSSQNSHKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVTAQDGICFVIISAFGQVYFLEADRLFYFWERKE
KNGRKSIRKDELEEAAYPISLGYAPRIDYISIIEQLYFSPSSSAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=1033197 AB8O67_RS12355 WP_044155259.1 2367576..2368196(+) (recU) [Bacillus halotolerans strain XYK2-4]
GTGATTCGGTATCCTAACGGAAAAACGTTTCAGCCGAAACATCCGGTTTCATCCCAAAACAGTCATAAAAGAGCGCCATC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTGA
TACACAAAAAGCCCACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGCGCTGCAGTCATAAAAGAAGCCTAT
TTTAAACAATCATCGACAACAGATTATAACGGTATTTATAAAGGGCGGTACATTGACTTTGAGGCGAAAGAGACAAAAAA
CAAAACCTCTTTCCCCCTGCAGAATTTCCATGACCATCAAATTGAGCATATGAAGCAGGTAACGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGGCCAGGTTTATTTTTTAGAAGCCGATAGGCTGTTTTATTTCTGGGAAAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTAGAGGAAGCAGCTTATCCGATTTCTCTTGGATACGCGCCAAGAAT
TGATTATATTAGTATTATTGAGCAGCTTTATTTTTCGCCATCATCTAGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

96.117

100

0.961

Multiple sequence alignment