Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB8O67_RS08080 Genome accession   NZ_CP166053
Coordinates   1515475..1515753 (+) Length   92 a.a.
NCBI ID   WP_024121253.1    Uniprot ID   A0A9Q4EGS6
Organism   Bacillus halotolerans strain XYK2-4     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1510475..1520753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS08060 (AB8O67_08070) - 1511667..1512578 (+) 912 WP_369888542.1 ketopantoate reductase family protein -
  AB8O67_RS08065 (AB8O67_08075) - 1512606..1513838 (-) 1233 WP_369888543.1 aminopeptidase -
  AB8O67_RS08070 (AB8O67_08080) - 1513952..1514083 (-) 132 WP_024121251.1 protein YkpC -
  AB8O67_RS08075 (AB8O67_08085) mreBH 1514186..1515193 (-) 1008 WP_024121252.1 cell shape-determining protein MreBH -
  AB8O67_RS08080 (AB8O67_08090) abrB 1515475..1515753 (+) 279 WP_024121253.1 transcriptional regulator AbhA Regulator
  AB8O67_RS08085 (AB8O67_08095) - 1515944..1517230 (+) 1287 WP_326138700.1 ATP-binding protein -
  AB8O67_RS08090 (AB8O67_08100) - 1517246..1518076 (+) 831 WP_326138701.1 gamma-glutamylcyclotransferase -
  AB8O67_RS08095 (AB8O67_08105) ktrC 1518148..1518813 (+) 666 WP_010334094.1 Ktr system potassium transporter KtrC -
  AB8O67_RS08100 (AB8O67_08110) ade 1518970..1520703 (+) 1734 WP_326138702.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10284.12 Da        Isoelectric Point: 5.8872

>NTDB_id=1033191 AB8O67_RS08080 WP_024121253.1 1515475..1515753(+) (abrB) [Bacillus halotolerans strain XYK2-4]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVEGDKIILKKYKPHGICLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=1033191 AB8O67_RS08080 WP_024121253.1 1515475..1515753(+) (abrB) [Bacillus halotolerans strain XYK2-4]
ATGAAATCAATAGGTGTTGTAAGAAAAGTAGATGAATTAGGCCGTATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCTATTAAAGACAGCATTGAGTTTTTTGTCGAGGGCGATAAAATTATTTTGAAAAAGTACAAACCTCATGGCATTT
GTTTAATGACTGGGGAAATCACTTCAGAAAATAAAGAGTACGGCAACGGTAAAATTACGTTAAGCCCTGAAGGCGCACAA
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

57.143

98.913

0.565

Multiple sequence alignment