Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AB8O67_RS07955 Genome accession   NZ_CP166053
Coordinates   1491377..1491952 (+) Length   191 a.a.
NCBI ID   WP_044156058.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1486377..1496952
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS07925 (AB8O67_07935) dapD 1486550..1487260 (+) 711 WP_024121226.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  AB8O67_RS07930 (AB8O67_07940) - 1487331..1488455 (+) 1125 WP_069486479.1 N-acetyldiaminopimelate deacetylase -
  AB8O67_RS07935 (AB8O67_07945) - 1488516..1488761 (+) 246 WP_010334064.1 YkuS family protein -
  AB8O67_RS07940 (AB8O67_07950) - 1488796..1489599 (-) 804 WP_044156062.1 mechanosensitive ion channel family protein -
  AB8O67_RS07945 (AB8O67_07955) ahpA 1489843..1490385 (+) 543 WP_010334066.1 biofilm-specific peroxidase AhpA -
  AB8O67_RS07950 (AB8O67_07960) ykuV 1490467..1490925 (+) 459 WP_254503319.1 thiol-disulfide oxidoreductase YkuV -
  AB8O67_RS07955 (AB8O67_07965) rok 1491377..1491952 (+) 576 WP_044156058.1 transcriptional regulator Rok Regulator
  AB8O67_RS07960 (AB8O67_07970) - 1491993..1492958 (-) 966 WP_024121231.1 hypothetical protein -
  AB8O67_RS07965 (AB8O67_07975) - 1493091..1493690 (+) 600 WP_106294292.1 molybdenum cofactor guanylyltransferase -
  AB8O67_RS07970 (AB8O67_07980) - 1493742..1494761 (+) 1020 WP_069486483.1 MoeB/ThiF family adenylyltransferase -
  AB8O67_RS07975 (AB8O67_07985) glp 1494779..1496071 (+) 1293 WP_369888537.1 gephyrin-like molybdotransferase Glp -
  AB8O67_RS07980 (AB8O67_07990) mobB 1496032..1496553 (+) 522 WP_369888538.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21799.79 Da        Isoelectric Point: 9.8783

>NTDB_id=1033190 AB8O67_RS07955 WP_044156058.1 1491377..1491952(+) (rok) [Bacillus halotolerans strain XYK2-4]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEVKKDFRSERKTDSLPVLAELAAQEIRSYQPPS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGDIESAESATE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=1033190 AB8O67_RS07955 WP_044156058.1 1491377..1491952(+) (rok) [Bacillus halotolerans strain XYK2-4]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGATTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGCGATAAAATATACGCTAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCCGAAGTCAAAAAGGATTTCC
GTTCTGAACGAAAAACTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCCATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCTAAAGCAGCTAAACTGCGTGAAGCGGCTATTAAAACATTAAAACGCCACAACGCGG
CAATTAAAAGCTCTGAACTTCAAAAAGAGATTGAAAAGGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGTTTAATTAAAATGTATCCGGAAGTGAAAAAACCGTATCGCGGCCAGTACATTTTAGAGGGTGACATCGAATCAGCTGA
ATCAGCAACAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

96.859

100

0.969

Multiple sequence alignment