Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AB8O67_RS05750 Genome accession   NZ_CP166053
Coordinates   1105110..1105688 (+) Length   192 a.a.
NCBI ID   WP_044156506.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1100110..1110688
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS05725 - 1100618..1101133 (-) 516 WP_369810943.1 methyl-accepting chemotaxis protein -
  AB8O67_RS05730 - 1101422..1101799 (-) 378 Protein_1062 protoglobin domain-containing protein -
  AB8O67_RS05735 (AB8O67_05730) - 1102057..1103586 (-) 1530 WP_044156510.1 FAD-dependent oxidoreductase -
  AB8O67_RS05740 (AB8O67_05735) - 1103698..1104555 (+) 858 WP_059293097.1 SDR family oxidoreductase -
  AB8O67_RS05745 (AB8O67_05740) - 1104584..1104817 (-) 234 WP_369888508.1 IDEAL domain-containing protein -
  AB8O67_RS05750 (AB8O67_05745) comK 1105110..1105688 (+) 579 WP_044156506.1 competence transcription factor ComK Regulator
  AB8O67_RS05755 (AB8O67_05750) - 1105733..1106632 (-) 900 WP_044156505.1 SDR family oxidoreductase -
  AB8O67_RS05760 (AB8O67_05755) - 1106845..1107114 (+) 270 WP_106294548.1 excalibur calcium-binding domain-containing protein -
  AB8O67_RS05765 (AB8O67_05760) - 1107155..1108624 (-) 1470 WP_286240489.1 sodium:solute symporter -
  AB8O67_RS05770 (AB8O67_05765) - 1108621..1108821 (-) 201 WP_010333642.1 DUF3311 domain-containing protein -
  AB8O67_RS05775 (AB8O67_05770) - 1109013..1109375 (-) 363 WP_059336343.1 hypothetical protein -
  AB8O67_RS05780 (AB8O67_05775) - 1109531..1110151 (+) 621 WP_044156499.1 TVP38/TMEM64 family protein -
  AB8O67_RS05785 (AB8O67_05780) lepB 1110153..1110674 (+) 522 WP_059293092.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22487.84 Da        Isoelectric Point: 8.0250

>NTDB_id=1033177 AB8O67_RS05750 WP_044156506.1 1105110..1105688(+) (comK) [Bacillus halotolerans strain XYK2-4]
MSQKTDTPLESYEVNSATIAVLPEEIDGKICSKIIEKDCMFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKPTEFDDTEVTFSNGKKMELPVSCNSFENQVYRTAWLRTKFQDRIEH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=1033177 AB8O67_RS05750 WP_044156506.1 1105110..1105688(+) (comK) [Bacillus halotolerans strain XYK2-4]
ATGAGTCAGAAAACTGACACACCATTAGAATCGTATGAAGTAAACAGCGCAACAATTGCCGTTTTGCCAGAAGAAATCGA
CGGCAAAATCTGTTCAAAAATCATTGAAAAAGACTGTATGTTTTACGTCAGCATGAAGCCGCTGCAAATTGTCGACCGAA
GCTGCCGATTTTTCGGATCAAGCTACGCGGGAAGAAAAGCGGGAACTTATGAAGTGACAAAAATTTCTCACAAACCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACTAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAACCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAACGGAAAAAAGATGGAACTGC
CGGTCTCCTGCAATTCGTTCGAGAATCAGGTATACCGGACAGCCTGGCTCAGAACCAAATTTCAGGACAGAATCGAACAC
CGTGTCCCGAAACGGCAGGAATTTATGCTGTATCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTTGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

95.312

100

0.953

Multiple sequence alignment