Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AB8O67_RS02185 Genome accession   NZ_CP166053
Coordinates   431246..432196 (+) Length   316 a.a.
NCBI ID   WP_254502439.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 426246..437196
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS02160 (AB8O67_02165) rapC 427635..428783 (+) 1149 WP_024120212.1 response regulator aspartate phosphatase RapC Regulator
  AB8O67_RS02165 (AB8O67_02170) phrC 428767..428889 (+) 123 WP_024120213.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  AB8O67_RS02170 (AB8O67_02175) - 428994..429086 (-) 93 WP_024120214.1 YjcZ family sporulation protein -
  AB8O67_RS02175 (AB8O67_02180) - 429233..429343 (-) 111 WP_024120215.1 YjcZ family sporulation protein -
  AB8O67_RS02180 (AB8O67_02185) - 429496..430860 (-) 1365 WP_326139510.1 aspartate kinase -
  AB8O67_RS02185 (AB8O67_02190) ceuB 431246..432196 (+) 951 WP_254502439.1 petrobactin ABC transporter permease YclN Machinery gene
  AB8O67_RS02190 (AB8O67_02195) yclO 432189..433136 (+) 948 WP_024120217.1 petrobactin ABC transporter permease YclO -
  AB8O67_RS02195 (AB8O67_02200) yclP 433130..433888 (+) 759 WP_024120218.1 petrobactin ABC transporter ATP-binding protein YclP -
  AB8O67_RS02200 (AB8O67_02205) - 433910..434863 (+) 954 WP_326157030.1 siderophore ABC transporter substrate-binding protein -
  AB8O67_RS02205 (AB8O67_02210) - 434912..436330 (-) 1419 WP_044161878.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34983.43 Da        Isoelectric Point: 9.8154

>NTDB_id=1033170 AB8O67_RS02185 WP_254502439.1 431246..432196(+) (ceuB) [Bacillus halotolerans strain XYK2-4]
MKLRYLFFLLIILAVTSVFIGVEDLSPLDLFDLSKEEASTLFASRLPRLISILIAGMSMSICGLIMQQITRNKFVSPTTA
GTMDWARLGILISLLLFTSASPLMKMLIAFVFALVGNFLFMKILEKIKFNDTIFIPLVGLMLGNIVSSIATFIAYKYDLI
QNVSSWLQGDFSLVVKGRYELLYLSIPLVIIAYVYADKFTVAGMGESFSVNLGLKYKRVVNIGLILVSLITSLVILTVGM
LPFLGLIIPNIVSIYRGDNLKNSLPHTALLGAVFVLFCDILGRVIIFPYEISIGLMVGIIGSGIFLFMLLRRKAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=1033170 AB8O67_RS02185 WP_254502439.1 431246..432196(+) (ceuB) [Bacillus halotolerans strain XYK2-4]
ATGAAGCTACGTTACTTATTTTTTCTGCTTATCATATTAGCAGTCACTTCTGTATTTATCGGCGTAGAAGATTTGTCGCC
GCTTGATCTCTTTGATTTAAGCAAAGAAGAGGCGTCAACGCTCTTTGCCAGCCGTTTGCCGCGGCTGATCAGCATTCTGA
TCGCGGGCATGAGCATGAGCATCTGCGGCCTGATTATGCAGCAGATCACCAGAAACAAATTCGTGTCACCGACAACGGCC
GGTACGATGGACTGGGCGAGGCTGGGAATCTTAATATCCTTGCTTCTGTTTACATCGGCAAGTCCTTTAATGAAAATGCT
GATTGCTTTTGTCTTTGCTTTAGTCGGCAATTTTCTGTTTATGAAAATTCTTGAAAAAATCAAGTTTAACGACACCATCT
TTATTCCGCTTGTCGGTTTAATGCTCGGGAATATCGTCAGCTCAATCGCGACGTTTATCGCGTATAAATATGACCTGATC
CAGAACGTGTCATCATGGCTTCAGGGGGATTTCTCCTTAGTTGTGAAAGGGAGATACGAGCTTCTTTATCTGAGTATTCC
GCTTGTCATCATTGCCTATGTTTATGCGGATAAATTTACAGTGGCGGGTATGGGAGAAAGCTTTTCTGTCAACCTCGGCC
TCAAGTATAAACGGGTTGTGAACATCGGGCTCATTCTCGTATCTCTGATTACGTCACTTGTCATTTTGACTGTCGGTATG
CTTCCGTTTCTCGGTTTAATCATCCCGAACATTGTATCGATTTACAGAGGAGACAACCTGAAAAACAGCCTGCCGCACAC
TGCGCTGCTGGGAGCGGTTTTTGTTCTGTTTTGCGATATATTGGGCAGAGTCATTATCTTCCCATATGAAATCTCGATTG
GTCTGATGGTCGGAATCATCGGCAGCGGCATTTTCCTGTTTATGCTGTTAAGGAGAAAAGCGTATGCGTAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

53.797

100

0.538

Multiple sequence alignment