Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AB8O67_RS01980 Genome accession   NZ_CP166053
Coordinates   371079..371516 (-) Length   145 a.a.
NCBI ID   WP_326139496.1    Uniprot ID   -
Organism   Bacillus halotolerans strain XYK2-4     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 366079..376516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8O67_RS01945 (AB8O67_01950) - 366607..367062 (+) 456 WP_202663586.1 RDD family protein -
  AB8O67_RS01950 (AB8O67_01955) - 367174..367479 (+) 306 WP_369888591.1 YckD family protein -
  AB8O67_RS01955 (AB8O67_01960) - 367619..368038 (+) 420 WP_024120173.1 MarR family winged helix-turn-helix transcriptional regulator -
  AB8O67_RS01960 (AB8O67_01965) - 368029..368367 (+) 339 WP_059291983.1 DUF3147 family protein -
  AB8O67_RS01965 (AB8O67_01970) - 368384..369112 (+) 729 WP_059353084.1 AAA family ATPase -
  AB8O67_RS01970 (AB8O67_01975) - 369185..370618 (+) 1434 WP_326139495.1 family 1 glycosylhydrolase -
  AB8O67_RS01975 (AB8O67_01980) nin/comJ 370654..371052 (-) 399 WP_024120177.1 competence protein ComJ Regulator
  AB8O67_RS01980 (AB8O67_01985) nucA/comI 371079..371516 (-) 438 WP_326139496.1 DNA-entry nuclease Machinery gene
  AB8O67_RS01985 (AB8O67_01990) tlpC 371701..373425 (-) 1725 WP_059334473.1 methyl-accepting chemotaxis protein TlpC -
  AB8O67_RS01990 (AB8O67_01995) hxlB 373534..374091 (-) 558 WP_044161924.1 6-phospho-3-hexuloisomerase -
  AB8O67_RS01995 (AB8O67_02000) hxlA 374097..374729 (-) 633 WP_003224929.1 3-hexulose-6-phosphate synthase -
  AB8O67_RS02000 (AB8O67_02005) hxlR 374961..375323 (+) 363 WP_044161922.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15973.72 Da        Isoelectric Point: 4.2623

>NTDB_id=1033166 AB8O67_RS01980 WP_326139496.1 371079..371516(-) (nucA/comI) [Bacillus halotolerans strain XYK2-4]
MDIIKTLLLVIVVIAAAAVGLIKGDFFSDDQKTSQTEEYDETLAFPSERYPETANHIKDAISEGHSDVCTIDRDGAEERR
EQSLKDVPSKTGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHKLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1033166 AB8O67_RS01980 WP_326139496.1 371079..371516(-) (nucA/comI) [Bacillus halotolerans strain XYK2-4]
ATGGACATTATAAAAACTTTACTTCTCGTAATAGTCGTCATAGCAGCTGCAGCTGTTGGCCTGATTAAGGGAGACTTTTT
CTCAGACGATCAAAAAACGTCTCAAACAGAAGAATATGACGAAACACTGGCCTTCCCTTCTGAGCGTTATCCTGAGACAG
CAAATCATATCAAGGACGCAATAAGTGAGGGGCATTCAGATGTGTGCACCATAGACAGAGACGGAGCTGAGGAACGCCGC
GAACAATCATTAAAAGACGTACCTTCCAAAACAGGGTATGACCGAGATGAATGGCCAATGGCCATGTGCAAAGAAGGCGG
TGAAGGGGCTTCTGTAGAATATATTTCTCCCGCTGACAATCGCGGCGCAGGCTCCTGGGTCGGGCATAAGCTGACCGATT
ACCCTGACGGCACAAAGGTTTTATTTACGATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(48-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

92.361

99.31

0.917

Multiple sequence alignment