Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   DXE39_RS13005 Genome accession   NZ_LT992460
Coordinates   2503728..2504501 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus isolate 9_LA_281     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2498728..2509501
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DXE39_RS12970 - 2498980..2499750 (-) 771 WP_000473705.1 isoprenyl transferase -
  DXE39_RS12975 frr 2500123..2500677 (-) 555 WP_001280006.1 ribosome recycling factor -
  DXE39_RS12980 pyrH 2500696..2501418 (-) 723 WP_000057330.1 UMP kinase -
  DXE39_RS12985 tsf 2501555..2502436 (-) 882 WP_000201387.1 translation elongation factor Ts -
  DXE39_RS12990 - 2502471..2502584 (-) 114 WP_001789890.1 hypothetical protein -
  DXE39_RS12995 rpsB 2502618..2503386 (-) 769 Protein_2435 30S ribosomal protein S2 -
  DXE39_RS13000 - 2503585..2503677 (-) 93 WP_001790530.1 hypothetical protein -
  DXE39_RS13005 codY 2503728..2504501 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  DXE39_RS13010 hslU 2504526..2505930 (-) 1405 Protein_2438 ATP-dependent protease ATPase subunit HslU -
  DXE39_RS13015 hslV 2505996..2506541 (-) 546 WP_064140248.1 ATP-dependent protease subunit HslV -
  DXE39_RS13020 xerC 2506538..2507434 (-) 897 WP_001015606.1 tyrosine recombinase XerC -
  DXE39_RS13025 trmFO 2507851..2509158 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=1033166 DXE39_RS13005 WP_000055337.1 2503728..2504501(-) (codY) [Staphylococcus aureus isolate 9_LA_281]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=1033166 DXE39_RS13005 WP_000055337.1 2503728..2504501(-) (codY) [Staphylococcus aureus isolate 9_LA_281]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGATCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCGAT
TGAACATATCTTTGAAGAACTTGGCGGTACGGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTTATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAG

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment