Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   JNUCC21_RS18600 Genome accession   NZ_CP166019
Coordinates   3660709..3661398 (-) Length   229 a.a.
NCBI ID   WP_369878394.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-21     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3655709..3666398
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS18565 (JNUCC21_18595) - 3655906..3656388 (-) 483 WP_003151394.1 flagellar protein FlgN -
  JNUCC21_RS18570 (JNUCC21_18600) flgM 3656403..3656669 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  JNUCC21_RS18575 (JNUCC21_18605) - 3656739..3657158 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  JNUCC21_RS18580 (JNUCC21_18610) comFC 3657232..3657921 (-) 690 WP_199022660.1 phosphoribosyltransferase family protein Machinery gene
  JNUCC21_RS18585 (JNUCC21_18615) - 3657927..3658211 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  JNUCC21_RS18590 (JNUCC21_18620) comFA 3658269..3659654 (-) 1386 WP_150941463.1 DEAD/DEAH box helicase Machinery gene
  JNUCC21_RS18595 (JNUCC21_18625) - 3659763..3660611 (-) 849 WP_003151387.1 DegV family protein -
  JNUCC21_RS18600 (JNUCC21_18630) degU 3660709..3661398 (-) 690 WP_369878394.1 two-component system response regulator DegU Regulator
  JNUCC21_RS18605 (JNUCC21_18635) degS 3661475..3662638 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  JNUCC21_RS18610 (JNUCC21_18640) - 3662861..3663508 (+) 648 WP_007407485.1 YigZ family protein -
  JNUCC21_RS18615 (JNUCC21_18645) - 3663513..3664733 (+) 1221 WP_012118574.1 LCP family protein -
  JNUCC21_RS18620 (JNUCC21_18650) - 3664832..3665908 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25867.51 Da        Isoelectric Point: 5.5393

>NTDB_id=1033149 JNUCC21_RS18600 WP_369878394.1 3660709..3661398(-) (degU) [Bacillus sp. JNUCC-21]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGESNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=1033149 JNUCC21_RS18600 WP_369878394.1 3660709..3661398(-) (degU) [Bacillus sp. JNUCC-21]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAGAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-118)

Bacterial regulatory proteins, luxR family (GerE)

(165-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996

Multiple sequence alignment