Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JNUCC21_RS11830 Genome accession   NZ_CP166019
Coordinates   2356889..2357497 (+) Length   202 a.a.
NCBI ID   WP_031304205.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-21     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2351889..2362497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS11790 (JNUCC21_11820) - 2352942..2353448 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  JNUCC21_RS11795 (JNUCC21_11825) - 2353587..2354000 (+) 414 WP_017418017.1 Hsp20/alpha crystallin family protein -
  JNUCC21_RS11800 (JNUCC21_11830) - 2354030..2354464 (-) 435 WP_061582128.1 YppG family protein -
  JNUCC21_RS11805 (JNUCC21_11835) - 2354651..2354833 (+) 183 WP_003153532.1 YppF family protein -
  JNUCC21_RS11810 (JNUCC21_11840) - 2354872..2355240 (-) 369 WP_007409492.1 YppE family protein -
  JNUCC21_RS11815 (JNUCC21_11845) - 2355286..2355531 (-) 246 WP_015240083.1 DUF5446 family protein -
  JNUCC21_RS11820 (JNUCC21_11850) sspM 2355737..2355841 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  JNUCC21_RS11825 (JNUCC21_11855) - 2355885..2356847 (-) 963 WP_369878172.1 DUF2515 domain-containing protein -
  JNUCC21_RS11830 (JNUCC21_11860) recU 2356889..2357497 (+) 609 WP_031304205.1 Holliday junction resolvase RecU Machinery gene
  JNUCC21_RS11835 (JNUCC21_11865) - 2357536..2360319 (+) 2784 WP_015240084.1 PBP1A family penicillin-binding protein -
  JNUCC21_RS11840 (JNUCC21_11870) - 2360397..2360888 (-) 492 WP_032870046.1 YpoC family protein -
  JNUCC21_RS11845 (JNUCC21_11875) nth 2360885..2361544 (-) 660 WP_060562797.1 endonuclease III -
  JNUCC21_RS11850 (JNUCC21_11880) dnaD 2361563..2362261 (-) 699 WP_003153516.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23652.73 Da        Isoelectric Point: 9.5778

>NTDB_id=1033120 JNUCC21_RS11830 WP_031304205.1 2356889..2357497(+) (recU) [Bacillus sp. JNUCC-21]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWDRKE
NNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1033120 JNUCC21_RS11830 WP_031304205.1 2356889..2357497(+) (recU) [Bacillus sp. JNUCC-21]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCCCATTC
TTACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTTGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCACGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGACAGAAAGGAG
AACAATGGCAGAAAATCGATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment