Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   JNUCC21_RS07400 Genome accession   NZ_CP166019
Coordinates   1400351..1400815 (-) Length   154 a.a.
NCBI ID   WP_003154622.1    Uniprot ID   A0A9Q3QIJ3
Organism   Bacillus sp. JNUCC-21     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1395351..1405815
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS07380 (JNUCC21_07400) - 1395831..1397651 (+) 1821 WP_369878708.1 PAS domain-containing protein -
  JNUCC21_RS07385 (JNUCC21_07405) - 1397632..1398845 (-) 1214 Protein_1396 aminotransferase A -
  JNUCC21_RS07390 (JNUCC21_07410) - 1399046..1399207 (-) 162 WP_007409608.1 hypothetical protein -
  JNUCC21_RS07395 (JNUCC21_07415) cheV 1399396..1400307 (+) 912 WP_007409609.1 chemotaxis protein CheV -
  JNUCC21_RS07400 (JNUCC21_07420) kre 1400351..1400815 (-) 465 WP_003154622.1 YkyB family protein Regulator
  JNUCC21_RS07405 (JNUCC21_07425) - 1400938..1402230 (-) 1293 WP_015239757.1 MFS transporter -
  JNUCC21_RS07410 (JNUCC21_07430) - 1402306..1402800 (-) 495 WP_088462390.1 L,D-transpeptidase family protein -
  JNUCC21_RS07415 (JNUCC21_07435) - 1402875..1403738 (-) 864 WP_072589039.1 metallophosphoesterase -
  JNUCC21_RS07420 (JNUCC21_07440) fadH 1403883..1404647 (+) 765 WP_015417368.1 2,4-dienoyl-CoA reductase -
  JNUCC21_RS07425 (JNUCC21_07445) - 1404812..1405308 (+) 497 Protein_1404 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17784.55 Da        Isoelectric Point: 10.4864

>NTDB_id=1033112 JNUCC21_RS07400 WP_003154622.1 1400351..1400815(-) (kre) [Bacillus sp. JNUCC-21]
MDDHAYSKELQPTIENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSNNPRFSQQQSDVLISIGD
YYFHMPPTKEDFQHLPHLGTLNQSYRNPKAQMSLTKAKNVLQKYVGLKEKPLAANRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=1033112 JNUCC21_RS07400 WP_003154622.1 1400351..1400815(-) (kre) [Bacillus sp. JNUCC-21]
ATGGACGACCACGCTTATTCGAAAGAGCTGCAGCCAACCATCGAGAATCTTTCAAAAGCTGTTTATACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTTTATCTGCTGAAAAAACGGGCATTACAAAAGCTTGTGAAAGAAGGCAAAG
GGAAAAAAATAGGGCTTCACTTTTCAAATAATCCCAGGTTTAGCCAACAGCAGTCAGACGTACTTATCTCTATCGGAGAC
TACTATTTTCACATGCCTCCAACAAAAGAAGACTTCCAGCATCTTCCGCATTTAGGTACGTTAAATCAGTCGTACCGCAA
TCCTAAAGCACAAATGTCTTTGACAAAAGCGAAAAACGTATTGCAAAAATATGTGGGCTTAAAGGAAAAACCGCTTGCCG
CCAACAGGCAGCAGCCCGCTTATCATAAACCCGTATTTAAAAAACTTGGTGAGAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(13-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

92.857

100

0.929

Multiple sequence alignment