Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   JNUCC21_RS01775 Genome accession   NZ_CP166019
Coordinates   331645..332082 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus sp. JNUCC-21     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 326645..337082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JNUCC21_RS01750 (JNUCC21_01750) - 327664..328800 (+) 1137 WP_072588780.1 zinc-dependent alcohol dehydrogenase -
  JNUCC21_RS01755 (JNUCC21_01755) - 328815..329249 (+) 435 WP_007409358.1 RDD family protein -
  JNUCC21_RS01760 (JNUCC21_01760) - 329367..329645 (+) 279 WP_263612330.1 YckD family protein -
  JNUCC21_RS01765 (JNUCC21_01765) - 329749..331185 (+) 1437 WP_076425807.1 glycoside hydrolase family 1 protein -
  JNUCC21_RS01770 (JNUCC21_01770) nin/comJ 331226..331624 (-) 399 WP_014416873.1 competence protein ComJ Regulator
  JNUCC21_RS01775 (JNUCC21_01775) nucA/comI 331645..332082 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  JNUCC21_RS01780 (JNUCC21_01780) hxlB 332440..332997 (-) 558 WP_150940979.1 6-phospho-3-hexuloisomerase -
  JNUCC21_RS01785 (JNUCC21_01785) hxlA 332994..333629 (-) 636 WP_025284209.1 3-hexulose-6-phosphate synthase -
  JNUCC21_RS01790 (JNUCC21_01790) - 333861..334223 (+) 363 WP_007409352.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=1033090 JNUCC21_RS01775 WP_003156588.1 331645..332082(-) (nucA/comI) [Bacillus sp. JNUCC-21]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=1033090 JNUCC21_RS01775 WP_003156588.1 331645..332082(-) (nucA/comI) [Bacillus sp. JNUCC-21]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGGGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAACAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACACCAGCTTACCAATG
ATCCCGACGGAACAAGAGTATTATTTAAAATTAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641

Multiple sequence alignment