Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   BD33_RS05285 Genome accession   NZ_CP007193
Coordinates   1007274..1007825 (+) Length   183 a.a.
NCBI ID   WP_002856575.1    Uniprot ID   -
Organism   Campylobacter jejuni strain NS4-9-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1002274..1012825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BD33_RS05255 (BD33_05295) pgsA 1002370..1002906 (+) 537 WP_002853053.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BD33_RS05260 (BD33_05300) rseP 1002903..1004009 (+) 1107 WP_002864274.1 RIP metalloprotease RseP -
  BD33_RS05265 (BD33_05305) - 1004002..1004874 (+) 873 WP_002858448.1 VirK family antimicrobial peptide resistance protein -
  BD33_RS05270 (BD33_05310) - 1004852..1006207 (-) 1356 WP_002863358.1 FAD-dependent oxidoreductase -
  BD33_RS05275 (BD33_05315) - 1006222..1006659 (-) 438 WP_002857985.1 DUF302 domain-containing protein -
  BD33_RS05280 (BD33_05320) rpsF 1006888..1007265 (+) 378 WP_002858097.1 30S ribosomal protein S6 -
  BD33_RS05285 (BD33_05325) ssb 1007274..1007825 (+) 552 WP_002856575.1 single-stranded DNA-binding protein Machinery gene
  BD33_RS05290 (BD33_05330) rpsR 1007836..1008096 (+) 261 WP_002853032.1 30S ribosomal protein S18 -
  BD33_RS05295 (BD33_05335) lon 1008157..1010532 (-) 2376 WP_002858084.1 endopeptidase La -
  BD33_RS05300 (BD33_05340) - 1010549..1011196 (-) 648 WP_002852961.1 outer membrane protein assembly factor BamD -
  BD33_RS05305 (BD33_05345) fliW 1011357..1011746 (+) 390 WP_002852982.1 flagellar assembly protein FliW -
  BD33_RS05310 (BD33_05350) proC 1011746..1012477 (+) 732 WP_002858388.1 pyrroline-5-carboxylate reductase Machinery gene
  BD33_RS05315 (BD33_05355) ctsT 1012474..1012776 (+) 303 WP_002853046.1 type II secretion system protein Machinery gene

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20800.68 Da        Isoelectric Point: 5.0431

>NTDB_id=103299 BD33_RS05285 WP_002856575.1 1007274..1007825(+) (ssb) [Campylobacter jejuni strain NS4-9-1]
MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKREETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRF
EQWSDQNGQNRSKHSIQVENMEMLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
QHEEKLKEIDIDAYDSDDTNLPF

Nucleotide


Download         Length: 552 bp        

>NTDB_id=103299 BD33_RS05285 WP_002856575.1 1007274..1007825(+) (ssb) [Campylobacter jejuni strain NS4-9-1]
ATGTTTAACAAAGTTGTTTTGGTTGGAAATCTTACACGCGATATAGAAATGCGTTATGCACAAAGCGGTAGTGCTATTGG
AGCTTCTGCTATCGCAGTAACAAGAAGATTTACCACAAATGGAGAAAAAAGAGAGGAAACTTGCTTTATTGATATAAGTT
TTTATGGTCGCACCGCAGAAGTTGCAAACCAATACCTTACAAAAGGTTCAAAAGTACTCATAGAAGGACGTTTGAGATTT
GAACAATGGAGTGATCAAAATGGACAAAATCGCTCTAAACATAGCATTCAAGTTGAAAATATGGAAATGCTTGGCAATTC
CAATGCTCCACAACAAGGCGGAAATTTTGGCAATAATAGCTTTTCAAACAACAATTATAGTGGAAACTATGAAAATCAAA
GCTATGATCCTTATATGAGTGAAAATCAAAATTTTAATAAAGCAAAAACAAACCCTACTCCACAAAGAAACCAAAACCCA
CAACACGAAGAAAAATTAAAAGAAATTGATATCGATGCTTATGATAGCGATGATACTAATTTACCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-104)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

38.418

96.721

0.372

Multiple sequence alignment