Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   DYY98_RS12810 Genome accession   NZ_LT992436
Coordinates   2499645..2500616 (+) Length   323 a.a.
NCBI ID   WP_000876313.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2494645..2505616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS12795 nrdI 2495715..2496113 (+) 399 WP_000692521.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -
  DYY98_RS12800 nrdE 2496076..2498181 (+) 2106 WP_064131610.1 class 1b ribonucleoside-diphosphate reductase subunit alpha -
  DYY98_RS12805 nrdF 2498299..2499270 (+) 972 WP_000562500.1 class 1b ribonucleoside-diphosphate reductase subunit beta -
  DYY98_RS12810 ceuB 2499645..2500616 (+) 972 WP_000876313.1 ABC transporter permease Machinery gene
  DYY98_RS12815 - 2500603..2501559 (+) 957 WP_001245581.1 iron chelate uptake ABC transporter family permease subunit -
  DYY98_RS12820 - 2501556..2502317 (+) 762 WP_000616861.1 ABC transporter ATP-binding protein -
  DYY98_RS12825 - 2502432..2503460 (+) 1029 WP_000754454.1 ferrated catecholamine ABC transporter substrate-binding lipoprotein SstD -
  DYY98_RS12835 - 2503777..2504091 (-) 315 WP_001127269.1 CHY zinc finger protein -
  DYY98_RS12840 murB 2504109..2505032 (-) 924 WP_000608439.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 323 a.a.        Molecular weight: 35544.01 Da        Isoelectric Point: 10.1963

>NTDB_id=1032905 DYY98_RS12810 WP_000876313.1 2499645..2500616(+) (ceuB) [Staphylococcus aureus isolate 1549-REV]
MKYLLKGKILLLLLILLTIISLFIGVSELSIKDIFHLSDSQQNILFSSRIPRTMSILIAGSSLALAGLIMQQMMQNKFVS
PTTAGTMEWAKLGILIALLFFPTGHILLKLVFAVICSISGTFLFVKIIDFIKVKDVIFVPLLGIMMGGIVASFTTFISLR
TNAVQSIGNWLNGNFAIITSGRYEILYLSIPLLALTYLFANHFTIVGMGKDFTNNLGLSYEKLINVALFITATITALVVV
TVGTLPFLGLVIPNIISIYRGDHLKNAIPHTMMLGAIFVLFSDIVGRVIVYPYEINIGLTIGVFGTIIFLILLMKGRKNY
AQQ

Nucleotide


Download         Length: 972 bp        

>NTDB_id=1032905 DYY98_RS12810 WP_000876313.1 2499645..2500616(+) (ceuB) [Staphylococcus aureus isolate 1549-REV]
ATGAAGTATTTATTAAAGGGAAAAATTTTGCTTCTATTACTTATATTGCTAACAATCATTTCGTTGTTTATAGGTGTCAG
TGAACTGTCTATTAAAGATATCTTTCATTTATCAGACTCACAGCAAAATATATTGTTCTCAAGTCGAATACCAAGAACAA
TGAGTATTTTAATTGCTGGAAGTTCATTAGCTTTAGCTGGCCTAATCATGCAACAAATGATGCAAAATAAGTTTGTTAGT
CCAACTACAGCTGGGACGATGGAGTGGGCAAAATTAGGTATCTTAATTGCCTTATTATTCTTTCCAACTGGTCATATTTT
ATTAAAACTAGTATTTGCTGTTATTTGCAGCATCAGCGGAACATTTTTATTTGTTAAAATTATTGATTTTATCAAAGTGA
AAGATGTCATCTTTGTACCACTATTAGGGATTATGATGGGTGGCATTGTCGCTAGTTTTACAACGTTTATTTCATTACGT
ACGAACGCCGTACAAAGCATTGGTAACTGGCTTAACGGGAACTTTGCCATTATCACAAGTGGACGTTATGAAATTTTATA
TTTAAGTATTCCTCTTTTAGCATTGACATATCTTTTTGCGAATCATTTCACAATTGTAGGAATGGGTAAAGACTTTACCA
ATAATTTAGGTTTGAGTTATGAAAAATTAATAAATGTTGCTCTATTTATTACTGCCACAATTACGGCATTAGTCGTCGTG
ACAGTTGGAACTTTACCATTCTTAGGTTTAGTTATTCCAAATATTATTTCGATTTATAGAGGCGATCATTTGAAAAATGC
AATTCCTCATACAATGATGTTAGGTGCAATATTTGTACTGTTTTCAGATATTGTAGGTAGAGTCATCGTTTATCCTTATG
AAATAAACATTGGCTTAACGATTGGTGTGTTTGGAACAATCATTTTCCTTATCTTACTAATGAAAGGTAGGAAAAATTAT
GCGCAACAATAA

Domains

Predicted by InterProScan.

FecCD transport family (FecCD)

(13-315)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

47.5

99.071

0.471