Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DYY98_RS12410 Genome accession   NZ_LT992436
Coordinates   2421160..2421834 (+) Length   224 a.a.
NCBI ID   WP_001166504.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2416160..2426834
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS12380 - 2416373..2417440 (+) 1068 WP_000980142.1 membrane protein -
  DYY98_RS12385 - 2417591..2418634 (+) 1044 WP_001030756.1 alpha/beta hydrolase -
  DYY98_RS12395 - 2418963..2419391 (+) 429 WP_000198504.1 hypothetical protein -
  DYY98_RS12400 - 2419602..2420108 (-) 507 WP_000940129.1 GNAT family N-acetyltransferase -
  DYY98_RS12405 graX 2420221..2421144 (+) 924 WP_000802948.1 auxiliary protein GraX/ApsX -
  DYY98_RS12410 braR 2421160..2421834 (+) 675 WP_001166504.1 response regulator transcription factor GraR/ApsR Regulator
  DYY98_RS12415 graS 2421827..2422867 (+) 1041 WP_001061270.1 histidine kinase GraS/ApsS -
  DYY98_RS12420 vraF 2423014..2423775 (+) 762 WP_000153733.1 ABC transporter ATP-binding protein VraF -
  DYY98_RS12425 - 2423765..2425654 (+) 1890 WP_000009403.1 FtsX-like permease family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 26034.86 Da        Isoelectric Point: 4.3968

>NTDB_id=1032902 DYY98_RS12410 WP_001166504.1 2421160..2421834(+) (braR) [Staphylococcus aureus isolate 1549-REV]
MQILLVEDDNTLFQELKKELEQWDFNVAGIEDFGKVMDTFESFNPEIVILDVQLPKYDGFYWCRKMREVSNVPILFLSSR
DNPMDQVMSMELGADDYMQKPFYTNVLIAKLQAIYRRVYEFTAEEKRTLTWQDAVVDLSKDSIQKGDQTIFLSKTEMIIL
EILITKKNQIVSRDTIITALWDDEAFVSDNTLTVNVNRLRKKLSEIGMDSAVETKVGKGYMAHE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=1032902 DYY98_RS12410 WP_001166504.1 2421160..2421834(+) (braR) [Staphylococcus aureus isolate 1549-REV]
ATGCAAATACTACTAGTAGAAGATGACAATACTTTGTTTCAAGAATTGAAAAAAGAATTAGAACAATGGGATTTTAATGT
TGCTGGTATTGAAGATTTCGGCAAAGTAATGGATACATTTGAAAGTTTTAATCCTGAAATTGTTATATTGGATGTTCAAT
TACCTAAATATGATGGGTTTTATTGGTGCAGAAAAATGAGAGAAGTTTCCAACGTACCAATATTATTTTTATCATCTCGT
GATAATCCAATGGATCAAGTGATGAGTATGGAACTTGGCGCAGATGATTATATGCAAAAGCCTTTTTATACAAATGTATT
AATTGCTAAATTACAAGCGATTTATCGCCGAGTGTATGAATTTACTGCTGAAGAAAAACGTACATTGACTTGGCAAGATG
CTGTCGTTGATCTATCAAAAGATAGTATACAAAAAGGTGATCAGACGATTTTTCTATCCAAAACAGAAATGATTATATTA
GAAATTCTTATTACTAAAAAAAATCAAATCGTTTCTAGAGATACAATTATTACTGCGCTATGGGATGATGAAGCATTTGT
CAGTGATAACACATTAACAGTTAATGTGAACCGATTACGTAAGAAACTATCTGAAATAGGGATGGACAGCGCAGTTGAAA
CAAAAGTAGGAAAAGGATATATGGCACATGAATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-111)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

40.909

98.214

0.402