Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   DYY98_RS04695 Genome accession   NZ_LT992436
Coordinates   917898..918716 (-) Length   272 a.a.
NCBI ID   WP_001124427.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-REV     
Function   repressor of recA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 912898..923716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY98_RS04670 - 913991..914968 (+) 978 WP_000379095.1 metal-dependent hydrolase -
  DYY98_RS04680 - 915229..916065 (-) 837 WP_000886472.1 hypothetical protein -
  DYY98_RS04685 - 916074..917591 (-) 1518 WP_000535840.1 ABC transporter ATP-binding protein -
  DYY98_RS04690 - 917606..917920 (-) 315 WP_000435806.1 YfhH family protein -
  DYY98_RS04695 recX 917898..918716 (-) 819 WP_001124427.1 recombination regulator RecX Regulator
  DYY98_RS04700 sgtB 918977..919786 (-) 810 WP_000830380.1 monofunctional peptidoglycan glycosyltransferase SgtB -
  DYY98_RS04705 - 920128..920643 (-) 516 WP_000163283.1 type 1 glutamine amidotransferase domain-containing protein -
  DYY98_RS04710 - 920777..920938 (-) 162 WP_001005407.1 SE1561 family protein -
  DYY98_RS04715 yfkAB 921162..922313 (+) 1152 WP_001089602.1 radical SAM/CxCxxxxC motif protein YfkAB -
  DYY98_RS04720 - 922576..923106 (-) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 32259.10 Da        Isoelectric Point: 5.9211

>NTDB_id=1032874 DYY98_RS04695 WP_001124427.1 917898..918716(-) (recX) [Staphylococcus aureus isolate 1549-REV]
MPKITKIEVQKKNKERFNLFLDEQFEMGIDIDTLVKFNLKKGQQLEAADMAEIQKYDHYRIGLNKAIQYLSYKKRTEKEV
LQYLQKEEISEQAISEVIEYCYREKLIDHQDYAESLKNTMIRTTDKGPKIYQQKLYQLGIEPNIIEMFTELYREQQELDD
IIQIAEKISKTKKGPQNKVKEKVMQSLIQKGFEMETIHAVLNEMDFTQDEAVLDDLLQRDLEKIYNKNRKKYTQQKLISK
TIEGLMRKGYKYDKIKAKLEESGIADGTEEIE

Nucleotide


Download         Length: 819 bp        

>NTDB_id=1032874 DYY98_RS04695 WP_001124427.1 917898..918716(-) (recX) [Staphylococcus aureus isolate 1549-REV]
GTGCCGAAGATTACTAAAATAGAAGTTCAAAAGAAAAACAAAGAACGTTTTAATCTTTTTTTAGACGAACAATTTGAAAT
GGGTATAGATATCGATACATTAGTCAAATTTAATTTAAAAAAAGGGCAACAACTTGAAGCTGCTGACATGGCAGAGATTC
AAAAGTATGATCATTATCGCATAGGTTTAAATAAAGCAATCCAATATTTATCATATAAAAAGAGAACTGAAAAAGAAGTT
TTACAATATTTACAAAAAGAAGAGATATCAGAGCAAGCGATTTCTGAAGTGATTGAATATTGTTATCGCGAAAAGTTAAT
CGACCATCAAGATTATGCAGAAAGTTTAAAAAATACAATGATTCGCACGACAGATAAAGGACCTAAAATTTATCAACAAA
AACTATATCAACTTGGTATAGAACCAAATATCATTGAAATGTTTACAGAACTTTATAGAGAACAACAGGAACTTGATGAT
ATTATCCAAATTGCTGAAAAAATATCTAAAACAAAAAAGGGGCCACAAAATAAGGTTAAAGAAAAAGTAATGCAATCTTT
AATTCAAAAAGGGTTTGAAATGGAAACCATTCATGCTGTATTGAATGAAATGGATTTTACACAAGATGAAGCGGTTTTAG
ACGATTTATTACAACGAGATTTAGAAAAAATTTATAATAAAAATCGAAAGAAGTACACGCAACAAAAATTAATTTCAAAA
ACTATCGAAGGCCTTATGAGAAAAGGATATAAATATGATAAAATTAAAGCTAAATTAGAAGAAAGTGGTATTGCCGATGG
AACAGAAGAAATTGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Staphylococcus aureus strain ATCC 12600

99.265

100

0.993