Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   DYY96_RS12900 Genome accession   NZ_LT992435
Coordinates   2516232..2517314 (+) Length   360 a.a.
NCBI ID   WP_001622509.1    Uniprot ID   -
Organism   Staphylococcus aureus isolate 1549-SCV     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2511232..2522314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY96_RS12880 gdpS 2511601..2512671 (-) 1071 WP_000460988.1 GGDEF domain-containing protein GdpS -
  DYY96_RS12885 - 2512989..2514044 (+) 1056 WP_000258151.1 glycosyltransferase family 4 protein -
  DYY96_RS12890 - 2514216..2514857 (-) 642 WP_000192949.1 YigZ family protein -
  DYY96_RS12895 fakB1 2515001..2515867 (+) 867 WP_000686346.1 fatty acid kinase binding subunit FakB1 -
  DYY96_RS12900 comFA 2516232..2517314 (+) 1083 WP_001622509.1 DEAD/DEAH box helicase Machinery gene
  DYY96_RS12905 - 2517307..2517981 (+) 675 WP_001057970.1 ComF family protein -
  DYY96_RS12910 hpf 2518042..2518614 (+) 573 WP_000617735.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  DYY96_RS12915 secA 2519029..2521560 (+) 2532 WP_000506533.1 preprotein translocase subunit SecA -
  DYY96_RS12920 - 2521602..2521695 (+) 94 Protein_2414 hypothetical protein -

Sequence

Protein


Download         Length: 360 a.a.        Molecular weight: 41991.47 Da        Isoelectric Point: 9.5935

>NTDB_id=1032817 DYY96_RS12900 WP_001622509.1 2516232..2517314(+) (comFA) [Staphylococcus aureus isolate 1549-SCV]
MDNVTRYKITESSQSSSQAYYHLSFELSEQQSYASEHIVRAIRMRQTILLYAVTGAGKTEMMFQGIQYARRQGDNIAIVS
PRVDVVVEISKRIKDAFLNEDIDILHQQSSQQFEGHFVVCTVHQLYRFKQHFDTIFIDEVDAFPLSMDKSLQQALKSSTK
VEHATIYMTATPPKQLLSEIPHENIIKLPARFHKKSLPIPKYRYFKLNNNKIQKMLYRILQDQISNQRYTLVFFNNIETM
IKTFSVYKQKITKLTYVHSEDVFRFEKVEQLRNGHFDVIFTTTILERGFTMANLDVVVIDAHQYTQEALIQIAGRVGRKL
ECPTGKVLFFHEGVSMNMILAKKEIQNMNKLALKRGWIDE

Nucleotide


Download         Length: 1083 bp        

>NTDB_id=1032817 DYY96_RS12900 WP_001622509.1 2516232..2517314(+) (comFA) [Staphylococcus aureus isolate 1549-SCV]
ATGGATAATGTAACAAGATATAAAATAACAGAGAGTTCGCAAAGTTCATCACAAGCATATTATCATCTCTCATTTGAATT
GTCGGAACAACAGTCTTATGCCTCAGAACACATTGTTCGAGCCATTAGAATGAGACAAACGATTTTGTTATATGCAGTAA
CAGGTGCAGGTAAGACAGAAATGATGTTTCAAGGCATTCAATATGCAAGACGACAGGGAGATAATATAGCTATTGTGTCA
CCACGTGTAGATGTTGTTGTAGAAATTAGTAAACGTATTAAAGACGCATTTCTTAATGAAGATATAGACATACTACACCA
GCAATCAAGTCAACAATTTGAAGGGCATTTTGTTGTATGCACAGTGCATCAACTTTACCGATTCAAACAGCACTTTGATA
CTATTTTTATTGATGAAGTCGATGCCTTTCCTTTATCAATGGATAAAAGTTTACAACAAGCATTAAAGTCATCTACTAAA
GTTGAACATGCAACGATTTATATGACAGCAACACCACCGAAACAACTTCTGTCAGAGATTCCCCACGAAAATATAATTAA
ATTGCCAGCTCGCTTTCATAAAAAATCACTTCCAATTCCTAAATATCGCTATTTCAAACTTAATAATAATAAGATTCAGA
AAATGTTATATCGAATTTTACAAGATCAAATTAGTAATCAACGTTATACACTGGTGTTTTTTAACAATATAGAAACAATG
ATTAAAACGTTTTCGGTTTATAAGCAGAAAATTACTAAATTAACATATGTCCATAGCGAGGATGTTTTTCGCTTTGAAAA
AGTTGAACAATTAAGGAATGGACATTTCGATGTCATTTTTACTACGACAATATTAGAACGTGGATTTACAATGGCAAATT
TAGATGTTGTTGTTATCGATGCACATCAATATACTCAAGAGGCTTTAATACAAATTGCTGGACGTGTTGGACGAAAATTA
GAATGTCCCACTGGAAAAGTATTGTTTTTTCATGAAGGAGTAAGTATGAATATGATTCTAGCTAAAAAAGAGATTCAAAA
TATGAACAAATTAGCATTAAAAAGAGGTTGGATTGATGAATAA

Domains

Predicted by InterProScan.

Type III restriction enzyme, res subunit (ResIII)

(25-173)

Helicase conserved C-terminal domain (Helicase_C)

(215-318)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

38.938

94.167

0.367