Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   DYY92_RS05475 Genome accession   NZ_LT992434
Coordinates   1043828..1044544 (+) Length   238 a.a.
NCBI ID   WP_000688492.1    Uniprot ID   P0A0I7
Organism   Staphylococcus aureus isolate 1549-WT     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1038828..1049544
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYY92_RS05445 - 1039043..1039669 (+) 627 WP_076686081.1 nitroreductase family protein -
  DYY92_RS05450 - 1040030..1040815 (+) 786 WP_000867944.1 carbon-nitrogen family hydrolase -
  DYY92_RS14200 hld 1041416..1041496 (-) 81 WP_000046022.1 delta-hemolysin -
  DYY92_RS05460 agrB 1041786..1042355 (+) 570 WP_001105708.1 accessory gene regulator AgrB -
  DYY92_RS05465 agrD 1042352..1042492 (+) 141 WP_001093929.1 cyclic lactone autoinducer peptide AgrD -
  DYY92_RS05470 agrC 1042517..1043809 (+) 1293 WP_172460476.1 quorum-sensing sensor histidine kinase AgrC -
  DYY92_RS05475 agrA 1043828..1044544 (+) 717 WP_000688492.1 quorum-sensing response regulator AgrA Regulator
  DYY92_RS05480 - 1044616..1044723 (+) 108 WP_031785433.1 hypothetical protein -
  DYY92_RS05485 - 1044913..1045872 (-) 960 WP_001253295.1 carbohydrate kinase family protein -
  DYY92_RS05490 - 1045869..1047353 (-) 1485 WP_000141419.1 sucrose-6-phosphate hydrolase -
  DYY92_RS05495 - 1047502..1048452 (-) 951 WP_000790314.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27905.90 Da        Isoelectric Point: 6.0927

>NTDB_id=1032702 DYY92_RS05475 WP_000688492.1 1043828..1044544(+) (agrA) [Staphylococcus aureus isolate 1549-WT]
MKIFICEDDPKQRENMVTIIKNYIMIEEKPMEIALATDNPYEVLEQAKNMNDIGCYFLDIQLSTDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPAELRTRIIDCLETAHTRLQLLSKDNSVETIELKRGSNSVYVQYDDIM
FFESSTKSHRLIAHLDNRQIEFYGNLKELSQLDDRFFRCHNSFVVNRHNIESIDSKERIVYFKNKEHCYASVRNVKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=1032702 DYY92_RS05475 WP_000688492.1 1043828..1044544(+) (agrA) [Staphylococcus aureus isolate 1549-WT]
ATGAAAATTTTCATTTGCGAAGACGATCCAAAACAAAGAGAAAACATGGTTACCATTATCAAAAATTATATAATGATAGA
AGAAAAGCCTATGGAAATTGCCCTCGCAACTGATAATCCTTATGAGGTGCTTGAGCAAGCTAAAAATATGAATGACATAG
GCTGTTACTTTTTAGATATTCAACTTTCAACTGATATTAATGGTATCAAATTAGGCAGTGAAATTCGTAAGCATGACCCA
GTTGGTAACATTATTTTCGTTACGAGTCACAGTGAACTTACGTATTTAACATTTGTCTACAAAGTTGCAGCGATGGATTT
TATTTTTAAGGATGATCCAGCAGAATTAAGAACACGTATTATAGACTGTTTAGAAACTGCACATACACGCTTACAATTAT
TATCAAAAGATAATAGCGTTGAAACGATTGAGTTAAAACGTGGCAGTAATTCTGTGTATGTTCAATATGATGATATTATG
TTTTTTGAATCATCAACTAAGTCACACAGACTCATTGCGCATTTAGACAATCGTCAAATTGAATTTTATGGTAATTTAAA
AGAACTGAGTCAATTAGATGATCGCTTCTTCAGATGTCATAATAGCTTTGTCGTCAATCGCCATAATATTGAATCTATTG
ATTCGAAAGAGCGAATTGTCTATTTTAAAAATAAAGAACACTGCTATGCATCGGTGAGAAACGTTAAAAAAATATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(151-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3BS1
  PDB 4G4K

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

100

100

1