Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   R8964_RS21135 Genome accession   NZ_AP028040
Coordinates   4575078..4576523 (+) Length   481 a.a.
NCBI ID   WP_076408296.1    Uniprot ID   -
Organism   Achromobacter xylosoxidans strain H1_3_1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4570078..4581523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8964_RS21120 (HBIAX_04168) leuA 4571066..4572775 (-) 1710 WP_269864099.1 2-isopropylmalate synthase -
  R8964_RS21125 (HBIAX_04169) - 4573258..4574235 (-) 978 WP_076408292.1 tripartite tricarboxylate transporter substrate binding protein -
  R8964_RS21130 (HBIAX_04170) - 4574429..4575079 (-) 651 WP_269864096.1 hypothetical protein -
  R8964_RS21135 (HBIAX_04171) rpoN/rpoN1 4575078..4576523 (+) 1446 WP_076408296.1 RNA polymerase factor sigma-54 Machinery gene
  R8964_RS21140 (HBIAX_04172) - 4576617..4576823 (+) 207 WP_076408297.1 stability determinant -
  R8964_RS21145 (HBIAX_04173) - 4576894..4577172 (+) 279 WP_076408299.1 type II toxin-antitoxin system RelE/ParE family toxin -
  R8964_RS21150 (HBIAX_04174) - 4577351..4577650 (+) 300 WP_006386990.1 bacterioferritin-associated ferredoxin -
  R8964_RS21155 (HBIAX_04175) - 4577620..4578540 (-) 921 WP_269864092.1 LysR substrate-binding domain-containing protein -
  R8964_RS21160 (HBIAX_04176) - 4578654..4579568 (+) 915 WP_404814367.1 DMT family transporter -
  R8964_RS21165 (HBIAX_04177) bfr 4579991..4580467 (+) 477 WP_006386993.1 bacterioferritin -
  R8964_RS21170 (HBIAX_04178) - 4580552..4581250 (-) 699 WP_133434290.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 52567.98 Da        Isoelectric Point: 4.8651

>NTDB_id=103269 R8964_RS21135 WP_076408296.1 4575078..4576523(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain H1_3_1]
MQNIVPMTRPILELRPGQHLTLTPQLQQSIRLLQLSTLELEAEISQVLADNPLLERDDEPASVETQAESERESSVQDDEP
APERDTPVEEMPGSGGVYPDDDSSLPEAARPDTLREHLLGQLVLTRAAPRDAALAALLIDELDENGYLGSPLEEILGWLP
AEMEPDLDELRAALSLLQSFDPAGIGARDMSECLLLQLRNPDTARLPEAADPKALACARLVCAQHLALLATGNHARLCAA
VGCDETTLRAAHALILRLEPRPGRAWTVPAADYAVPDVIVRKTRRGWQVTLNSAAVPRLQINGLYAQMLANQKESAHAGL
QSQLQQAKWMIRNVEQRFDTILRVAQAIVDRQTAFFSQGPVAMRPLILKDIAGELGLHESTISRATTQKYMLTPFGTLEL
KRFFGAGVSTDGGDATSATAVQTFIRQMVAEENRAKPLSDSQIMEKLADQGIVIARRTVAKYREALRIAPAALRKAQAAA
R

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=103269 R8964_RS21135 WP_076408296.1 4575078..4576523(+) (rpoN/rpoN1) [Achromobacter xylosoxidans strain H1_3_1]
ATGCAAAATATTGTACCTATGACCCGTCCTATTTTAGAACTGCGGCCCGGCCAGCATCTGACGCTGACCCCTCAATTGCA
GCAATCGATCCGGTTGCTGCAGCTGTCCACGCTCGAGCTCGAGGCGGAAATCTCGCAAGTGCTCGCCGACAATCCGTTGC
TGGAACGCGACGATGAGCCTGCCTCCGTCGAGACGCAGGCCGAATCCGAGCGCGAGTCGTCGGTGCAGGACGACGAACCC
GCGCCCGAGCGCGACACCCCGGTCGAGGAAATGCCGGGTTCGGGCGGGGTCTACCCCGATGACGATTCCAGCCTGCCCGA
GGCCGCCCGGCCCGACACCCTGCGCGAGCACCTGCTCGGGCAACTGGTGCTGACCCGCGCCGCGCCGCGCGATGCCGCGC
TGGCGGCGCTGCTGATCGATGAACTGGACGAGAATGGCTACCTGGGCTCGCCCCTGGAGGAAATCCTGGGCTGGCTGCCG
GCCGAGATGGAGCCGGACCTGGACGAGTTGCGCGCCGCGCTGTCGCTGCTGCAATCGTTCGACCCGGCCGGCATCGGCGC
GCGCGACATGTCCGAGTGCCTGCTGTTGCAATTGCGCAATCCCGACACGGCCCGGTTGCCCGAGGCCGCGGATCCCAAGG
CGCTGGCCTGCGCCCGCCTGGTCTGCGCCCAGCATCTGGCGCTGCTGGCCACTGGCAATCATGCCAGGCTGTGCGCCGCG
GTCGGTTGTGACGAGACCACGCTGCGCGCGGCGCACGCCCTGATCCTGCGTCTGGAGCCTCGTCCGGGCCGTGCCTGGAC
GGTCCCGGCGGCCGATTACGCCGTGCCCGACGTCATCGTGCGCAAGACGCGCCGCGGCTGGCAGGTGACGCTCAACAGCG
CCGCCGTGCCGCGGCTGCAGATCAACGGCCTCTACGCCCAAATGCTGGCCAACCAGAAGGAGTCGGCCCACGCCGGCCTG
CAGTCTCAGCTGCAACAGGCGAAATGGATGATCCGCAACGTGGAGCAGCGCTTCGACACCATCCTGCGAGTGGCCCAGGC
CATTGTCGACCGCCAGACCGCCTTCTTCAGCCAGGGGCCGGTGGCCATGCGGCCGCTCATCCTCAAGGACATTGCCGGCG
AACTGGGCCTGCATGAGTCCACCATTTCACGCGCCACGACACAGAAGTACATGCTCACTCCGTTCGGTACGCTGGAACTC
AAGCGCTTCTTCGGGGCGGGGGTGTCGACCGACGGCGGCGATGCCACATCCGCCACGGCGGTGCAGACTTTCATCCGCCA
GATGGTGGCCGAGGAGAACCGGGCCAAGCCGCTGTCCGACAGCCAGATCATGGAAAAACTGGCCGACCAAGGCATCGTCA
TCGCCCGCCGAACGGTCGCGAAATACCGCGAGGCACTGCGGATCGCGCCGGCCGCGCTACGCAAGGCGCAGGCCGCGGCG
CGATGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(108-305)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(12-55)

Sigma-54, DNA binding domain (Sigma54_DBD)

(320-475)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

49.505

100

0.52

Multiple sequence alignment