Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   AB8E30_RS18040 Genome accession   NZ_CP165965
Coordinates   3403699..3405525 (-) Length   608 a.a.
NCBI ID   WP_369900659.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 3398699..3410525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS18015 (AB8E30_18025) - 3399163..3399798 (-) 636 WP_369900655.1 GTP pyrophosphokinase family protein -
  AB8E30_RS18020 (AB8E30_18030) - 3399825..3400196 (-) 372 WP_369900656.1 hypothetical protein -
  AB8E30_RS18025 (AB8E30_18035) - 3400349..3400927 (+) 579 WP_369900657.1 CYTH domain-containing protein -
  AB8E30_RS18030 (AB8E30_18040) - 3401954..3402352 (+) 399 WP_369903619.1 globin -
  AB8E30_RS18035 (AB8E30_18045) - 3402352..3403245 (+) 894 WP_369900658.1 ClpXP adapter SpxH family protein -
  AB8E30_RS18040 (AB8E30_18050) pepF 3403699..3405525 (-) 1827 WP_369900659.1 oligoendopeptidase F Regulator
  AB8E30_RS18045 (AB8E30_18055) - 3406172..3407413 (-) 1242 WP_369900660.1 competence protein CoiA -
  AB8E30_RS18050 (AB8E30_18060) - 3407591..3409405 (-) 1815 WP_369900661.1 prolyl oligopeptidase family serine peptidase -

Sequence

Protein


Download         Length: 608 a.a.        Molecular weight: 70372.84 Da        Isoelectric Point: 4.7866

>NTDB_id=1032648 AB8E30_RS18040 WP_369900659.1 3403699..3405525(-) (pepF) [Bacillus manliponensis strain jeju3-1]
MTEQKSTKTLPPRSEVEEKYTWRLEDIFKTDADWENEFQEIKGLIPKLAQYKGKLGDSAAALLEALQYEDEVSMRLGKLY
TYAHMRYDQDTTNSTYQALNDRAKNLYSQASSAMAYIVPEILTIPEEKLKSFLQENKELNVYAHALEEITRQRPHVLSEA
EEALLAEASEVMSASSNTFGMLNNADLKFPSITDEDGEEVEVTHGRYIQFLESEDARVRRDAFHAVYETYGKYKNTFSST
LNGAIKRNNFYARVRKYDSARQAALSNNNIPESVYDQLVDTVNENLHLLHRYIDIRKRALGLDELHMYDLYTPLVQEVKM
KVTYEEAQDLLLKSLDVLGEEYVDILKEAYEKRWVDVYENKGKRSGAYSSGAYGTNPYILMNWHDNVNNLFTLAHEFGHS
VHSYYTRKTQPHVYGDYSIFVAEVASTCNEALLNDYLLKTTEDKKKRLYLLNHYLEGFRGTVFRQTMFAEFEHTVHKKVQ
EGHAVTPDMLTEIYYELNKKYFGDSVVIDEEVGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILEEGEPAVERYINEF
LKAGSSDYPIEVLKKAGVDMTSPEPVKEALQVFEEKLNELEALLFEEN

Nucleotide


Download         Length: 1827 bp        

>NTDB_id=1032648 AB8E30_RS18040 WP_369900659.1 3403699..3405525(-) (pepF) [Bacillus manliponensis strain jeju3-1]
ATGACTGAACAAAAATCAACAAAAACATTACCGCCGCGCAGTGAAGTTGAAGAGAAATATACGTGGCGCTTAGAGGATAT
TTTTAAGACAGATGCAGATTGGGAAAATGAGTTTCAAGAAATTAAGGGGTTAATTCCTAAGTTAGCTCAATATAAAGGAA
AACTTGGTGATTCAGCTGCAGCATTATTAGAAGCATTGCAGTACGAAGATGAAGTATCGATGCGACTTGGTAAGTTATAT
ACATATGCTCATATGCGCTATGACCAAGATACAACAAATTCAACATATCAAGCATTAAATGATCGTGCGAAAAACTTATA
TTCTCAAGCTTCTAGTGCAATGGCTTATATTGTGCCAGAAATTTTAACGATTCCAGAAGAGAAATTGAAGTCATTTTTAC
AAGAGAATAAAGAACTAAATGTATATGCACATGCATTAGAAGAAATTACACGTCAGCGTCCTCACGTATTATCTGAAGCA
GAAGAGGCGTTGTTAGCAGAAGCTTCTGAAGTAATGAGTGCATCAAGCAATACGTTTGGTATGTTAAACAATGCTGATTT
AAAGTTCCCATCTATTACTGATGAAGACGGGGAAGAAGTAGAAGTGACACATGGTCGTTATATTCAATTTTTAGAGAGTG
AAGATGCGCGCGTGCGCCGCGATGCATTTCACGCTGTGTACGAAACGTATGGCAAATATAAAAATACGTTCTCAAGTACG
TTAAACGGCGCAATTAAACGTAATAACTTCTATGCACGTGTACGTAAGTATGATTCTGCTCGTCAAGCAGCACTAAGTAA
TAACAACATTCCAGAGTCTGTATATGATCAGCTTGTTGATACAGTAAATGAAAACTTACATTTATTACATCGTTATATTG
ATATTCGCAAGCGTGCACTTGGCTTAGATGAGCTTCATATGTATGATTTATACACACCTCTAGTGCAAGAAGTGAAAATG
AAAGTAACATATGAAGAGGCACAAGATTTACTATTAAAATCATTAGATGTACTAGGTGAAGAATACGTTGATATTTTAAA
AGAAGCATACGAAAAACGCTGGGTTGATGTGTATGAGAATAAAGGAAAACGAAGCGGAGCGTATTCGTCAGGTGCATATG
GAACAAATCCATACATTTTAATGAACTGGCATGATAACGTGAATAACTTATTTACACTTGCTCATGAATTTGGGCATTCT
GTTCACAGTTACTATACAAGAAAAACGCAGCCGCACGTATACGGAGATTATTCCATTTTCGTTGCAGAAGTAGCGTCTAC
ATGTAATGAAGCGTTATTAAACGATTACTTACTAAAGACGACAGAAGATAAGAAGAAACGTTTATATTTATTAAATCATT
ATTTAGAAGGTTTCCGCGGCACAGTATTCCGTCAAACGATGTTTGCTGAATTTGAGCATACAGTTCATAAGAAAGTACAA
GAAGGTCATGCGGTTACGCCGGATATGTTAACGGAAATTTACTATGAATTAAATAAGAAATATTTCGGAGATAGTGTAGT
GATTGATGAGGAAGTCGGCTTAGAATGGTCTCGTATCCCGCATTTCTATTACAACTATTACGTATACCAATATGCAACGG
GTTTTAGCGCTGCAACAGCATTATCGAAACAAATTTTAGAAGAAGGAGAACCGGCTGTAGAACGTTATATTAATGAGTTC
TTAAAAGCAGGAAGCTCTGATTATCCAATTGAAGTGTTGAAAAAAGCAGGTGTAGATATGACATCACCAGAACCTGTAAA
AGAAGCATTGCAAGTATTTGAAGAGAAGTTAAATGAATTAGAAGCATTATTATTTGAAGAAAACTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(211-591)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.676

97.368

0.493

Multiple sequence alignment