Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AB8E30_RS17530 Genome accession   NZ_CP165965
Coordinates   3294826..3295149 (+) Length   107 a.a.
NCBI ID   WP_369900542.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 3289826..3300149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS17515 (AB8E30_17520) - 3290968..3291585 (-) 618 Protein_3423 aldehyde dehydrogenase family protein -
  AB8E30_RS17520 (AB8E30_17525) - 3291899..3294277 (-) 2379 WP_369900540.1 immune inhibitor A domain-containing protein -
  AB8E30_RS17525 (AB8E30_17530) - 3294614..3294745 (+) 132 WP_369900541.1 anti-repressor SinI family protein -
  AB8E30_RS17530 (AB8E30_17535) sinR 3294826..3295149 (+) 324 WP_369900542.1 helix-turn-helix domain-containing protein Regulator
  AB8E30_RS17535 (AB8E30_17540) - 3295234..3295827 (-) 594 WP_369900543.1 TasA family protein -
  AB8E30_RS17540 (AB8E30_17545) - 3296839..3297432 (-) 594 WP_369900544.1 TasA family protein -
  AB8E30_RS17545 (AB8E30_17550) - 3297522..3298244 (-) 723 WP_369900545.1 DUF4047 domain-containing protein -
  AB8E30_RS17550 (AB8E30_17555) - 3298440..3299027 (-) 588 WP_369900546.1 TasA family protein -
  AB8E30_RS17555 (AB8E30_17560) sipW 3299094..3299660 (-) 567 WP_369900547.1 signal peptidase I SipW -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12309.09 Da        Isoelectric Point: 7.3196

>NTDB_id=1032647 AB8E30_RS17530 WP_369900542.1 3294826..3295149(+) (sinR) [Bacillus manliponensis strain jeju3-1]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQQNPSIQFLTKIATVLHVSVDVLLHDDPTNENELDAEWTNLV
KEAMHSGVSKEQFKEFLEFTKWKQNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=1032647 AB8E30_RS17530 WP_369900542.1 3294826..3295149(+) (sinR) [Bacillus manliponensis strain jeju3-1]
ATGATTGGAGAACGTATAAAAAGACTTCGCTTGCAAAAAGGAATTTCTTTAACAGAGCTTGCCGAAAAAGCCGGCGTAGC
TAAATCTTATATTAGCTCTATTGAACGTAATTTACAGCAGAATCCTTCCATTCAATTTCTTACAAAGATCGCTACCGTTC
TTCACGTTTCGGTTGATGTTCTATTACACGATGATCCAACGAACGAAAACGAGCTAGATGCTGAATGGACAAACCTTGTT
AAAGAAGCCATGCACTCTGGTGTATCGAAAGAACAATTTAAAGAATTTTTGGAGTTTACAAAGTGGAAGCAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-61)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

63.303

100

0.645

Multiple sequence alignment