Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB8E30_RS16325 Genome accession   NZ_CP165965
Coordinates   3068956..3069558 (+) Length   200 a.a.
NCBI ID   WP_369900331.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3063956..3074558
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS16285 (AB8E30_16290) gpsB 3064238..3064576 (-) 339 WP_369900324.1 cell division regulator GpsB -
  AB8E30_RS16290 (AB8E30_16295) - 3064676..3065227 (-) 552 WP_369900325.1 DUF1273 domain-containing protein -
  AB8E30_RS16295 (AB8E30_16300) - 3065289..3065735 (-) 447 WP_369900326.1 CotD family spore coat protein -
  AB8E30_RS16300 (AB8E30_16305) - 3065980..3066363 (-) 384 WP_369900327.1 YppG family protein -
  AB8E30_RS16305 (AB8E30_16310) yppF 3066538..3066735 (+) 198 WP_369900328.1 YppF family protein -
  AB8E30_RS16310 (AB8E30_16315) - 3066761..3067120 (-) 360 WP_369900329.1 YppE family protein -
  AB8E30_RS16315 (AB8E30_16320) - 3067133..3067375 (-) 243 WP_034637151.1 hypothetical protein -
  AB8E30_RS16320 (AB8E30_16325) - 3067852..3068853 (-) 1002 WP_369900330.1 DUF2515 domain-containing protein -
  AB8E30_RS16325 (AB8E30_16330) recU 3068956..3069558 (+) 603 WP_369900331.1 Holliday junction resolvase RecU Machinery gene
  AB8E30_RS16330 (AB8E30_16335) - 3069625..3072261 (+) 2637 WP_369900332.1 PBP1A family penicillin-binding protein -
  AB8E30_RS16335 (AB8E30_16340) - 3072373..3072897 (-) 525 WP_369900333.1 YpoC family protein -
  AB8E30_RS16340 (AB8E30_16345) nth 3072881..3073546 (-) 666 WP_369900335.1 endonuclease III -
  AB8E30_RS16345 (AB8E30_16350) dnaD 3073560..3074270 (-) 711 WP_369900336.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 23457.04 Da        Isoelectric Point: 9.7509

>NTDB_id=1032645 AB8E30_RS16325 WP_369900331.1 3068956..3069558(+) (recU) [Bacillus manliponensis strain jeju3-1]
MTIRYPNGKRYTQTPKTHNPPIKKHTYSNRGMSLEEELNETNQYYLAQGIACMHKKPTPLQIVKVDYPARSAAVVKEAYF
QQPSTTDYNGVYKGKYVDFEAKETKNKTSLPLQNFHLHQIEHMKHVLLHKGIAFVIIKFTLHDEFYLLEAKHVISFWERK
EAGGRKSITKKEIEEHGFLLPLGYHPRIDYVRVLDMLYFS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=1032645 AB8E30_RS16325 WP_369900331.1 3068956..3069558(+) (recU) [Bacillus manliponensis strain jeju3-1]
ATGACCATTCGTTATCCAAATGGAAAAAGGTATACTCAAACACCAAAAACTCATAATCCACCGATAAAAAAACATACTTA
TAGTAATAGAGGTATGTCCCTTGAGGAGGAATTAAACGAAACGAATCAATATTACTTAGCTCAAGGTATTGCTTGTATGC
ATAAGAAACCGACCCCTCTTCAAATTGTAAAAGTAGACTACCCAGCTCGAAGCGCAGCTGTTGTAAAAGAAGCATACTTC
CAGCAGCCGTCTACAACGGATTACAATGGCGTATACAAAGGAAAATATGTTGATTTTGAAGCAAAGGAAACAAAAAATAA
AACGAGTCTTCCTTTGCAAAACTTCCACCTTCACCAAATCGAACATATGAAACATGTTTTGCTACATAAAGGCATTGCAT
TCGTTATTATTAAATTTACGCTTCATGATGAATTTTATTTACTAGAAGCAAAACATGTTATTTCATTTTGGGAACGAAAA
GAAGCGGGTGGAAGAAAATCAATTACAAAGAAGGAAATTGAAGAACACGGTTTCTTATTACCATTGGGTTATCACCCCCG
TATTGACTATGTACGTGTACTAGACATGCTTTATTTTTCGTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(30-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

61.5

100

0.615

Multiple sequence alignment