Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   LSAJ54_RS07645 Genome accession   NZ_LT960790
Coordinates   1520402..1521208 (-) Length   268 a.a.
NCBI ID   WP_016265510.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1515402..1526208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS07620 (LSAJ54_1550) - 1515798..1516229 (+) 432 WP_011375163.1 GNAT family N-acetyltransferase -
  LSAJ54_RS07625 (LSAJ54_1551) - 1516305..1516778 (+) 474 WP_099947437.1 hypothetical protein -
  LSAJ54_RS07630 (LSAJ54_1552) - 1516935..1518620 (+) 1686 WP_231953042.1 glycosyltransferase family 8 protein -
  LSAJ54_RS07635 (LSAJ54_1553) - 1518689..1519225 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  LSAJ54_RS07640 (LSAJ54_1554) mutY 1519312..1520415 (-) 1104 WP_099947439.1 A/G-specific adenine glycosylase -
  LSAJ54_RS07645 (LSAJ54_1555) recX 1520402..1521208 (-) 807 WP_016265510.1 recombination regulator RecX Regulator
  LSAJ54_RS07650 (LSAJ54_1556) - 1521210..1521389 (-) 180 WP_011375169.1 hypothetical protein -
  LSAJ54_RS07655 (LSAJ54_1557) rlmD 1521775..1523166 (+) 1392 WP_011375170.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  LSAJ54_RS07660 (LSAJ54_1558) - 1523382..1523888 (-) 507 WP_011375171.1 DUF805 domain-containing protein -
  LSAJ54_RS07665 (LSAJ54_1559) - 1523979..1524449 (+) 471 WP_011375172.1 nucleoside 2-deoxyribosyltransferase -
  LSAJ54_RS07670 (LSAJ54_1560) - 1524536..1524778 (+) 243 WP_011375173.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31069.99 Da        Isoelectric Point: 6.0698

>NTDB_id=1032644 LSAJ54_RS07645 WP_016265510.1 1520402..1521208(-) (recX) [Latilactobacillus sakei strain J54]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKAYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1032644 LSAJ54_RS07645 WP_016265510.1 1520402..1521208(-) (recX) [Latilactobacillus sakei strain J54]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGACGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGGCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCAGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCGTTGACGCTATATACAGACGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAACAAAAGATTAAACAGGGCTT
GATGCAAAAGGGCTTTGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTATCGCCTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369