Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AB8E30_RS08255 Genome accession   NZ_CP165965
Coordinates   1556685..1557143 (-) Length   152 a.a.
NCBI ID   WP_369902856.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1551685..1562143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS08230 (AB8E30_08235) - 1551806..1552357 (-) 552 WP_369902851.1 PadR family transcriptional regulator -
  AB8E30_RS08235 (AB8E30_08240) - 1552454..1553989 (-) 1536 WP_369902852.1 MDR family MFS transporter -
  AB8E30_RS08240 (AB8E30_08245) - 1554521..1555030 (+) 510 WP_369902853.1 hypothetical protein -
  AB8E30_RS08245 (AB8E30_08250) - 1555252..1555482 (-) 231 WP_369902855.1 phage holin -
  AB8E30_RS08250 (AB8E30_08255) - 1556033..1556653 (+) 621 WP_369903495.1 YkyA family protein -
  AB8E30_RS08255 (AB8E30_08260) kre 1556685..1557143 (-) 459 WP_369902856.1 YkyB family protein Regulator
  AB8E30_RS08260 (AB8E30_08265) - 1557670..1559202 (+) 1533 WP_369902857.1 exopolyphosphatase -
  AB8E30_RS08265 (AB8E30_08270) - 1559318..1561423 (+) 2106 WP_369902859.1 RNA degradosome polyphosphate kinase -
  AB8E30_RS08270 (AB8E30_08275) - 1561475..1561702 (-) 228 WP_369902860.1 hypothetical protein -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17642.27 Da        Isoelectric Point: 10.5629

>NTDB_id=1032638 AB8E30_RS08255 WP_369902856.1 1556685..1557143(-) (kre) [Bacillus manliponensis strain jeju3-1]
MKPAQSQSNSREQLSINQLAQSIFVVNRHAKSATNPKYLYWLKKAALERLIKEQKATKEGLHFSKNPKFSQQQSDVLVRA
GDYFFHIPPTKDDFRTLPHLGNLDHAYRNPKTHLSLTAAKKTLQIYIGPEAYKQEKKLSEAIPWYLRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=1032638 AB8E30_RS08255 WP_369902856.1 1556685..1557143(-) (kre) [Bacillus manliponensis strain jeju3-1]
ATGAAACCTGCACAATCACAGTCTAATTCCCGTGAACAACTCTCTATTAATCAATTAGCCCAATCCATTTTTGTTGTAAA
TCGTCATGCCAAATCTGCAACCAATCCAAAGTATTTATATTGGTTAAAAAAAGCAGCTTTAGAACGTCTCATAAAAGAAC
AAAAAGCAACAAAGGAAGGATTACATTTTTCTAAAAACCCTAAATTTAGTCAACAGCAGTCTGATGTTCTCGTTCGAGCG
GGCGACTATTTTTTCCATATCCCTCCAACGAAAGATGATTTTCGCACACTACCACACCTCGGTAATCTTGATCACGCATA
TCGAAATCCAAAAACACACCTTTCTTTGACTGCCGCAAAAAAAACGCTTCAAATATATATTGGTCCGGAAGCATACAAAC
AAGAGAAAAAACTTAGTGAAGCAATTCCTTGGTATTTACGTACATATACAAAGAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

62.931

76.316

0.48

Multiple sequence alignment