Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AB8E30_RS06775 Genome accession   NZ_CP165965
Coordinates   1290930..1291676 (+) Length   248 a.a.
NCBI ID   WP_369902585.1    Uniprot ID   -
Organism   Bacillus manliponensis strain jeju3-1     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 1285930..1296676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS06745 (AB8E30_06750) - 1286292..1288424 (+) 2133 WP_369902580.1 HD family phosphohydrolase -
  AB8E30_RS06750 (AB8E30_06755) ybeY 1288421..1288891 (+) 471 WP_369902581.1 rRNA maturation RNase YbeY -
  AB8E30_RS06755 (AB8E30_06760) - 1288888..1289241 (+) 354 WP_369902582.1 diacylglycerol kinase family protein -
  AB8E30_RS06760 (AB8E30_06765) - 1289298..1289696 (+) 399 WP_369902583.1 cytidine deaminase -
  AB8E30_RS06765 (AB8E30_06770) era 1289689..1290597 (+) 909 WP_369902584.1 GTPase Era -
  AB8E30_RS06770 (AB8E30_06775) - 1290753..1290896 (+) 144 WP_084157961.1 YqzL family protein -
  AB8E30_RS06775 (AB8E30_06780) recO 1290930..1291676 (+) 747 WP_369902585.1 DNA repair protein RecO Machinery gene
  AB8E30_RS06780 (AB8E30_06785) - 1292375..1293007 (+) 633 WP_200874675.1 helix-turn-helix transcriptional regulator -
  AB8E30_RS06785 (AB8E30_06790) - 1293037..1293849 (+) 813 WP_369902586.1 pyruvate, water dikinase regulatory protein -
  AB8E30_RS06790 (AB8E30_06795) - 1294103..1294561 (+) 459 WP_369902587.1 YaiI/YqxD family protein -
  AB8E30_RS06795 (AB8E30_06800) dnaG 1294601..1296397 (+) 1797 WP_369902588.1 DNA primase -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 28341.83 Da        Isoelectric Point: 8.1443

>NTDB_id=1032634 AB8E30_RS06775 WP_369902585.1 1290930..1291676(+) (recO) [Bacillus manliponensis strain jeju3-1]
MFQKIEGIVIRTTDYGETNKIVTIFSREFGKVSAMARGAKKPKSRLSSISQLLTHGHFLIQMGSGLGTLQQGEIISSMKE
IREDIFLTAYATFIVELTDKSTEDKKHNPYLFEMLNQTLHYMSEGTDPEVLALIYQTKMLPVLGLHPYFDTCAICRQEAE
FVAFSVREGGFLCKQHALQDSHAIPVGEAVHKLLRLFYHFDLGRLGNVSVKDETKKQMSTVLNMYYDEYCGIYLKSRRFL
SQLDKFKI

Nucleotide


Download         Length: 747 bp        

>NTDB_id=1032634 AB8E30_RS06775 WP_369902585.1 1290930..1291676(+) (recO) [Bacillus manliponensis strain jeju3-1]
ATGTTTCAAAAAATTGAGGGAATTGTAATTCGGACAACAGATTATGGAGAAACAAATAAAATTGTAACGATATTCTCTCG
GGAATTTGGTAAAGTGAGCGCAATGGCTAGAGGAGCGAAAAAGCCGAAAAGTAGGCTTTCATCTATTTCACAGTTATTAA
CTCACGGTCATTTTCTCATTCAAATGGGGTCTGGATTAGGAACATTGCAGCAGGGAGAGATTATTTCTTCTATGAAAGAA
ATTCGTGAAGATATATTTTTAACTGCATATGCGACATTTATTGTCGAATTAACTGATAAATCAACAGAAGATAAAAAGCA
TAATCCATATTTATTTGAAATGTTGAACCAGACATTGCATTATATGAGTGAAGGAACGGATCCTGAAGTGCTAGCATTAA
TTTATCAAACAAAAATGCTGCCAGTATTAGGTCTCCATCCATACTTTGATACATGTGCAATTTGTCGCCAAGAAGCAGAA
TTTGTCGCCTTCTCTGTTCGAGAAGGCGGTTTTCTGTGTAAACAACATGCACTGCAAGACTCGCATGCTATTCCTGTTGG
AGAAGCTGTTCACAAGTTGCTTCGTTTATTTTATCATTTTGACTTAGGAAGGCTTGGGAACGTATCAGTAAAAGATGAAA
CAAAAAAGCAAATGAGTACGGTGTTAAATATGTATTATGATGAATATTGTGGAATATACTTAAAATCAAGGCGTTTTCTT
AGCCAACTCGACAAATTTAAAATATAA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-238)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

55.87

99.597

0.556

Multiple sequence alignment