Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AB8E30_RS00725 Genome accession   NZ_CP165965
Coordinates   117914..118198 (+) Length   94 a.a.
NCBI ID   WP_034642869.1    Uniprot ID   A0A073K5P4
Organism   Bacillus manliponensis strain jeju3-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 112914..123198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8E30_RS00710 (AB8E30_00710) - 113321..114520 (-) 1200 WP_369901550.1 ubiquitin-like domain-containing protein -
  AB8E30_RS00715 (AB8E30_00715) - 114630..115397 (-) 768 WP_369901551.1 TatD family hydrolase -
  AB8E30_RS00720 (AB8E30_00720) metG 115575..117593 (-) 2019 WP_369901552.1 methionine--tRNA ligase -
  AB8E30_RS00725 (AB8E30_00725) abrB 117914..118198 (+) 285 WP_034642869.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AB8E30_RS00730 (AB8E30_00730) rsmI 118499..119368 (-) 870 WP_369901553.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AB8E30_RS00735 (AB8E30_00735) - 119337..119627 (-) 291 WP_369901554.1 GIY-YIG nuclease family protein -
  AB8E30_RS00740 (AB8E30_00740) - 119614..120357 (-) 744 WP_369901556.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AB8E30_RS00745 (AB8E30_00745) yabA 120451..120801 (-) 351 WP_034642860.1 DNA replication initiation control protein YabA -
  AB8E30_RS00750 (AB8E30_00750) - 120816..121643 (-) 828 WP_034642857.1 stage 0 sporulation family protein -
  AB8E30_RS00755 (AB8E30_00755) holB 121648..122631 (-) 984 WP_369901557.1 DNA polymerase III subunit delta' -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10555.31 Da        Isoelectric Point: 5.2080

>NTDB_id=1032614 AB8E30_RS00725 WP_034642869.1 117914..118198(+) (abrB) [Bacillus manliponensis strain jeju3-1]
MKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDHNLALAEGKIILSKEGAE
QIMNELQQYIEAAK

Nucleotide


Download         Length: 285 bp        

>NTDB_id=1032614 AB8E30_RS00725 WP_034642869.1 117914..118198(+) (abrB) [Bacillus manliponensis strain jeju3-1]
ATGAAATCTACTGGTATTGTTCGTAAAGTTGATGAATTAGGTCGCGTAGTAATTCCAATTGAATTACGTCGTACATTAGG
TATTGCAGAAAAGGATGCTCTTGAAATTTATGTGGATGATGAAAAGATCATCTTGAAAAAATATAAGCCAAACATGACTT
GCCAAGTAACTGGTGAAGTATCTGACCATAACCTAGCTTTAGCTGAAGGTAAAATCATCTTAAGCAAAGAAGGCGCAGAG
CAAATCATGAACGAGCTTCAACAATATATCGAGGCAGCAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-89)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-50)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A073K5P4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

85.106

100

0.851

Multiple sequence alignment