Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   LSAJ54_RS00390 Genome accession   NZ_LT960790
Coordinates   77354..78160 (+) Length   268 a.a.
NCBI ID   WP_011373794.1    Uniprot ID   Q38ZJ7
Organism   Latilactobacillus sakei strain J54     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 72354..83160
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS00370 (LSAJ54_0076) yycF 72553..73266 (+) 714 WP_011373790.1 response regulator YycF -
  LSAJ54_RS00375 walK 73276..75172 (+) 1897 Protein_74 cell wall metabolism sensor histidine kinase WalK -
  LSAJ54_RS00380 (LSAJ54_0079) - 75162..76493 (+) 1332 WP_099947173.1 YycH family regulatory protein -
  LSAJ54_RS00385 (LSAJ54_0080) - 76498..77319 (+) 822 WP_056946883.1 two-component system regulatory protein YycI -
  LSAJ54_RS00390 (LSAJ54_0081) vicX 77354..78160 (+) 807 WP_011373794.1 MBL fold metallo-hydrolase Regulator
  LSAJ54_RS00395 (LSAJ54_0082) htrA 78294..79562 (+) 1269 WP_056946885.1 S1C family serine protease Regulator
  LSAJ54_RS00400 (LSAJ54_0083) rlmH 80098..80577 (+) 480 WP_011373797.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  LSAJ54_RS00405 (LSAJ54_0084) - 80706..80912 (+) 207 WP_056948562.1 hypothetical protein -
  LSAJ54_RS00410 (LSAJ54_0085) add 81092..82110 (-) 1019 Protein_81 adenosine deaminase -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 29709.33 Da        Isoelectric Point: 5.0105

>NTDB_id=1032571 LSAJ54_RS00390 WP_011373794.1 77354..78160(+) (vicX) [Latilactobacillus sakei strain J54]
MVEKDEMRVSVLASSSSGNTTFIETPTQKILVDAGMSGKRVQDLMHSIGRDLKEVDSLLVTHEHRDHSSGVGVLARRYGI
DVYANQPTWDAMASIIGTVPDEHKHVFEMGKTKTLGDIDVESYGVSHDAAAAQFYQFHHNNRAFAILTDTGYVSDQIRGT
IENADAYLVECNHDLEMLRMGKYPWSLKQRILSDTGHLSNEDGASALMAFMGQQTKRVFLGHLSQENNMKELAHLTVASI
LEQHDYGVGTDFEILDTDPAIADPLFVV

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1032571 LSAJ54_RS00390 WP_011373794.1 77354..78160(+) (vicX) [Latilactobacillus sakei strain J54]
ATGGTAGAAAAAGATGAAATGCGGGTTAGCGTCTTAGCCAGCAGTAGTTCAGGCAACACAACTTTTATTGAAACACCAAC
TCAAAAAATATTAGTCGATGCGGGGATGAGTGGCAAACGGGTTCAGGATTTAATGCATAGCATTGGTCGGGATTTAAAAG
AGGTTGATAGTCTACTAGTGACGCACGAACATCGCGATCACAGTAGCGGTGTTGGCGTCTTAGCCCGCCGTTACGGGATT
GATGTGTACGCCAATCAACCGACTTGGGATGCGATGGCGTCAATTATTGGCACCGTCCCTGATGAACATAAGCACGTCTT
TGAGATGGGCAAAACCAAAACACTCGGCGATATCGATGTTGAAAGTTATGGTGTGTCACACGATGCCGCTGCGGCGCAAT
TCTATCAATTTCATCATAACAACCGGGCCTTCGCAATCTTAACGGATACGGGGTACGTTTCGGATCAAATCAGAGGCACT
ATCGAAAATGCGGATGCCTACTTGGTGGAATGTAATCACGATTTGGAAATGTTACGGATGGGAAAATATCCGTGGTCGCT
TAAACAACGGATCCTTAGTGATACTGGACATCTGTCTAACGAAGATGGCGCTTCAGCCTTAATGGCTTTTATGGGGCAAC
AAACAAAACGCGTTTTCCTAGGCCATTTGAGCCAAGAAAACAATATGAAGGAGTTGGCACACTTAACGGTGGCGTCAATT
TTAGAACAACATGATTATGGTGTTGGCACGGACTTTGAAATTTTAGATACAGATCCAGCGATTGCGGACCCTTTATTTGT
TGTTTAG

Domains

Predicted by InterProScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(17-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38ZJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

59.073

96.642

0.571

Multiple sequence alignment