Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   LSAJ54_RS00085 Genome accession   NZ_LT960790
Coordinates   19184..20059 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain J54     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 14184..25059
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAJ54_RS00065 (LSAJ54_0014) - 15067..16407 (-) 1341 WP_011373730.1 nucleobase:cation symporter-2 family protein -
  LSAJ54_RS00070 (LSAJ54_0015) rsmG 16776..17516 (+) 741 WP_011373731.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  LSAJ54_RS00075 (LSAJ54_0016) noc 17516..18415 (+) 900 WP_076647658.1 nucleoid occlusion protein -
  LSAJ54_RS00080 (LSAJ54_0017) - 18427..19194 (+) 768 WP_016264318.1 ParA family protein -
  LSAJ54_RS00085 (LSAJ54_0018) spo0J 19184..20059 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  LSAJ54_RS00090 (LSAJ54_0019) - 20078..20326 (+) 249 WP_011373735.1 DUF951 domain-containing protein -
  LSAJ54_RS00095 (LSAJ54_0020) ychF 20350..21450 (+) 1101 WP_099947157.1 redox-regulated ATPase YchF -
  LSAJ54_RS00100 (LSAJ54_0021) - 21468..22142 (+) 675 WP_056946775.1 DUF1129 domain-containing protein -
  LSAJ54_RS00105 (LSAJ54_0022) - 22179..22943 (+) 765 WP_056946771.1 prolyl oligopeptidase family serine peptidase -
  LSAJ54_RS00110 (LSAJ54_0023) - 23324..23992 (+) 669 WP_056946767.1 HAD hydrolase-like protein -
  LSAJ54_RS00115 (LSAJ54_0024) nrdI 23989..24456 (-) 468 WP_172425599.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=1032569 LSAJ54_RS00085 WP_016264319.1 19184..20059(+) (spo0J) [Latilactobacillus sakei strain J54]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1032569 LSAJ54_RS00085 WP_016264319.1 19184..20059(+) (spo0J) [Latilactobacillus sakei strain J54]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGACTCGAAGCTGTTTTTTCAGCATTTGAAGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCCAATCCTTATCAACCACGTAAAACGTTTGATGAGG
CAGCACTAGCAGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGCCGTTTTCGTGCTTCTAAATTAGCTGGTAAAACTACGATTCCAGCGATTACGCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCGGTCTTAGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCAC
AAGCCTATGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAACTACTTACGCCTGTTGGGCTTGCCAGCAGATGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTTGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTCGATACCAAGGTTAATATTGCGATGAACAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368