Detailed information
Bioinformatically predicted
Overview
| Name | radA | Type | Machinery gene |
| Locus tag | QUE35_RS03460 | Genome accession | NZ_AP028032 |
| Coordinates | 858589..859962 (+) | Length | 457 a.a. |
| NCBI ID | WP_022601014.1 | Uniprot ID | A0A495VM59 |
| Organism | Coprobacter fastidiosus strain JCM 33896 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 853589..864962
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QUE35_RS03445 (Cfast33896_06800) | mutA | 853789..855654 (+) | 1866 | WP_022601606.1 | methylmalonyl-CoA mutase small subunit | - |
| QUE35_RS03450 (Cfast33896_06810) | scpA | 855689..857830 (+) | 2142 | WP_009319392.1 | methylmalonyl-CoA mutase | - |
| QUE35_RS03455 (Cfast33896_06820) | - | 858005..858418 (+) | 414 | WP_022601015.1 | hypothetical protein | - |
| QUE35_RS03460 (Cfast33896_06830) | radA | 858589..859962 (+) | 1374 | WP_022601014.1 | DNA repair protein RadA | Machinery gene |
| QUE35_RS03465 (Cfast33896_06840) | - | 859975..861528 (+) | 1554 | WP_022601013.1 | NAD(P)/FAD-dependent oxidoreductase | - |
| QUE35_RS03470 (Cfast33896_06850) | - | 861552..863009 (+) | 1458 | WP_022601012.1 | carbon starvation protein A | - |
Sequence
Protein
Download Length: 457 a.a. Molecular weight: 50236.83 Da Isoelectric Point: 7.1112
>NTDB_id=103256 QUE35_RS03460 WP_022601014.1 858589..859962(+) (radA) [Coprobacter fastidiosus strain JCM 33896]
MAKTKSVYICTNCGADSPKWIGKCPICGEWNSYVEEIINTKPSATKSSYHSTENSKSKPLKLNEINIAEEPRIDVRNSEL
NRVLGGGLVPGSLVLIGGEPGIGKSTLILQTVLGLHGKKTLYVSGEESARQLKLRADRIQKSENPDCYIVCETSLEEIFV
HIKNVQPDLVIIDSIQTISTETIESSPGSVSQVRECSASILKFAKETGTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLSQNHEGLSGVAIAAAIEGIRPFLIETQSLVSTAAYG
TPQRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAMDLSIISAILSSNMDMAIENHTCMTGEVGLSG
EIRPVNRIEQRISEAEKLGFKRILIPYNNLKGFDDKKLNIEIVPVRKVEEAFRQLFG
MAKTKSVYICTNCGADSPKWIGKCPICGEWNSYVEEIINTKPSATKSSYHSTENSKSKPLKLNEINIAEEPRIDVRNSEL
NRVLGGGLVPGSLVLIGGEPGIGKSTLILQTVLGLHGKKTLYVSGEESARQLKLRADRIQKSENPDCYIVCETSLEEIFV
HIKNVQPDLVIIDSIQTISTETIESSPGSVSQVRECSASILKFAKETGTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFE
GDQHYMYRILRSIKNRFGSTAELGIYEMRQNGLREVSNPSELLLSQNHEGLSGVAIAAAIEGIRPFLIETQSLVSTAAYG
TPQRSATGFDLRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAMDLSIISAILSSNMDMAIENHTCMTGEVGLSG
EIRPVNRIEQRISEAEKLGFKRILIPYNNLKGFDDKKLNIEIVPVRKVEEAFRQLFG
Nucleotide
Download Length: 1374 bp
>NTDB_id=103256 QUE35_RS03460 WP_022601014.1 858589..859962(+) (radA) [Coprobacter fastidiosus strain JCM 33896]
ATGGCAAAAACAAAATCGGTATATATATGCACCAATTGCGGAGCTGATTCTCCGAAATGGATAGGGAAATGCCCTATTTG
CGGAGAATGGAACAGTTATGTAGAGGAAATCATCAATACTAAACCTTCAGCAACTAAAAGTTCATATCACTCGACCGAAA
ACAGCAAATCGAAACCTCTTAAACTGAATGAAATAAATATTGCAGAAGAGCCTCGTATAGATGTGCGAAACAGTGAATTG
AACAGGGTTCTCGGAGGAGGTCTGGTTCCTGGCTCATTAGTTTTGATCGGCGGCGAACCCGGAATAGGGAAATCGACTCT
GATTTTACAGACGGTTTTAGGTTTACATGGGAAAAAAACATTGTATGTCTCCGGAGAAGAAAGTGCCCGCCAACTGAAAT
TACGAGCAGACCGAATACAAAAAAGTGAAAATCCTGATTGTTATATCGTTTGTGAAACTTCTTTAGAAGAAATATTCGTG
CATATTAAAAACGTACAACCCGATTTAGTTATCATAGATTCTATTCAAACCATATCGACCGAGACGATCGAATCTTCTCC
GGGAAGTGTATCTCAAGTGCGGGAATGCTCTGCATCAATTCTCAAATTTGCAAAAGAAACCGGAACTCCCGTCTTATTGA
TCGGACATATTAATAAAGAAGGCAGTATTGCCGGACCTAAGGTTCTGGAGCACATCGTTGATACCGTGCTGCAATTCGAG
GGAGATCAACACTATATGTACCGAATTCTCAGGTCTATAAAAAACAGATTCGGAAGCACTGCCGAATTGGGAATATATGA
AATGAGACAAAACGGACTTCGTGAAGTCAGTAACCCCTCCGAGCTATTACTATCTCAGAATCATGAGGGATTAAGCGGGG
TCGCCATAGCTGCGGCCATAGAAGGAATACGTCCATTTCTGATCGAAACGCAATCTTTAGTAAGCACTGCCGCATACGGT
ACACCACAACGGTCGGCAACAGGATTCGATTTAAGAAGAATGAATATGCTTTTGGCTGTTCTCGAGAAACGTGTCGGATT
TAAACTTGCACAAAAAGATGTGTTCCTAAATATCGCCGGAGGATTGAAAGTTAACGATCCAGCTATGGACTTATCTATTA
TCAGCGCTATTCTTTCGTCCAATATGGACATGGCCATCGAGAACCACACCTGTATGACCGGAGAAGTCGGACTGTCCGGA
GAAATACGACCCGTCAACCGAATCGAACAGAGAATATCGGAAGCAGAAAAATTAGGATTCAAACGCATTTTGATTCCGTA
CAACAATCTAAAAGGGTTTGATGATAAAAAACTGAATATAGAAATTGTTCCCGTCCGTAAAGTCGAAGAAGCTTTCCGAC
AACTATTCGGATAA
ATGGCAAAAACAAAATCGGTATATATATGCACCAATTGCGGAGCTGATTCTCCGAAATGGATAGGGAAATGCCCTATTTG
CGGAGAATGGAACAGTTATGTAGAGGAAATCATCAATACTAAACCTTCAGCAACTAAAAGTTCATATCACTCGACCGAAA
ACAGCAAATCGAAACCTCTTAAACTGAATGAAATAAATATTGCAGAAGAGCCTCGTATAGATGTGCGAAACAGTGAATTG
AACAGGGTTCTCGGAGGAGGTCTGGTTCCTGGCTCATTAGTTTTGATCGGCGGCGAACCCGGAATAGGGAAATCGACTCT
GATTTTACAGACGGTTTTAGGTTTACATGGGAAAAAAACATTGTATGTCTCCGGAGAAGAAAGTGCCCGCCAACTGAAAT
TACGAGCAGACCGAATACAAAAAAGTGAAAATCCTGATTGTTATATCGTTTGTGAAACTTCTTTAGAAGAAATATTCGTG
CATATTAAAAACGTACAACCCGATTTAGTTATCATAGATTCTATTCAAACCATATCGACCGAGACGATCGAATCTTCTCC
GGGAAGTGTATCTCAAGTGCGGGAATGCTCTGCATCAATTCTCAAATTTGCAAAAGAAACCGGAACTCCCGTCTTATTGA
TCGGACATATTAATAAAGAAGGCAGTATTGCCGGACCTAAGGTTCTGGAGCACATCGTTGATACCGTGCTGCAATTCGAG
GGAGATCAACACTATATGTACCGAATTCTCAGGTCTATAAAAAACAGATTCGGAAGCACTGCCGAATTGGGAATATATGA
AATGAGACAAAACGGACTTCGTGAAGTCAGTAACCCCTCCGAGCTATTACTATCTCAGAATCATGAGGGATTAAGCGGGG
TCGCCATAGCTGCGGCCATAGAAGGAATACGTCCATTTCTGATCGAAACGCAATCTTTAGTAAGCACTGCCGCATACGGT
ACACCACAACGGTCGGCAACAGGATTCGATTTAAGAAGAATGAATATGCTTTTGGCTGTTCTCGAGAAACGTGTCGGATT
TAAACTTGCACAAAAAGATGTGTTCCTAAATATCGCCGGAGGATTGAAAGTTAACGATCCAGCTATGGACTTATCTATTA
TCAGCGCTATTCTTTCGTCCAATATGGACATGGCCATCGAGAACCACACCTGTATGACCGGAGAAGTCGGACTGTCCGGA
GAAATACGACCCGTCAACCGAATCGAACAGAGAATATCGGAAGCAGAAAAATTAGGATTCAAACGCATTTTGATTCCGTA
CAACAATCTAAAAGGGTTTGATGATAAAAAACTGAATATAGAAATTGTTCCCGTCCGTAAAGTCGAAGAAGCTTTCCGAC
AACTATTCGGATAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| radA | Bacillus subtilis subsp. subtilis str. 168 |
52.288 |
100 |
0.525 |
| radA | Streptococcus mitis NCTC 12261 |
47.598 |
100 |
0.477 |
| radA | Streptococcus pneumoniae Rx1 |
47.598 |
100 |
0.477 |
| radA | Streptococcus pneumoniae D39 |
47.598 |
100 |
0.477 |
| radA | Streptococcus pneumoniae R6 |
47.598 |
100 |
0.477 |
| radA | Streptococcus pneumoniae TIGR4 |
47.598 |
100 |
0.477 |
| radA | Streptococcus mitis SK321 |
47.38 |
100 |
0.475 |