Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   MFPB16_RS00085 Genome accession   NZ_LT960788
Coordinates   18960..19835 (+) Length   291 a.a.
NCBI ID   WP_016264319.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain MFPB16A1401     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 13960..24835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB16_RS00065 (MFPB16_0013) - 14843..16183 (-) 1341 WP_011373730.1 nucleobase:cation symporter-2 family protein -
  MFPB16_RS00070 (MFPB16_0014) rsmG 16552..17292 (+) 741 WP_099960123.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  MFPB16_RS00075 (MFPB16_0015) noc 17292..18191 (+) 900 WP_099960124.1 nucleoid occlusion protein -
  MFPB16_RS00080 (MFPB16_0016) - 18203..18970 (+) 768 WP_016264318.1 ParA family protein -
  MFPB16_RS00085 (MFPB16_0017) spo0J 18960..19835 (+) 876 WP_016264319.1 ParB/RepB/Spo0J family partition protein Regulator
  MFPB16_RS00090 (MFPB16_0018) - 19854..20102 (+) 249 WP_011373735.1 DUF951 domain-containing protein -
  MFPB16_RS00095 (MFPB16_0019) ychF 20126..21226 (+) 1101 WP_056946778.1 redox-regulated ATPase YchF -
  MFPB16_RS00100 (MFPB16_0020) - 21244..21918 (+) 675 WP_099960125.1 DUF1129 domain-containing protein -
  MFPB16_RS00105 (MFPB16_0021) - 21955..22719 (+) 765 WP_099960126.1 prolyl oligopeptidase family serine peptidase -
  MFPB16_RS00110 (MFPB16_0022) - 23100..23768 (+) 669 WP_016264323.1 HAD hydrolase-like protein -
  MFPB16_RS00115 (MFPB16_0023) nrdI 23765..24232 (-) 468 WP_016264324.1 class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI -

Sequence

Protein


Download         Length: 291 a.a.        Molecular weight: 32411.38 Da        Isoelectric Point: 9.8304

>NTDB_id=1032487 MFPB16_RS00085 WP_016264319.1 18960..19835(+) (spo0J) [Latilactobacillus sakei strain MFPB16A1401]
MVNKNGKGLGRGLEAVFSAFEGPNKNRADELVEEIALEDIRPNPYQPRKTFDEAALAELAASIKKSGVFQPIIVRKSING
YELIAGERRFRASKLAGKTTIPAITRQFDEEAMMEIAVLENLQREDLTPLEEAQAYDTLLKKLNLTQAEVSERLGKSRPY
IANYLRLLGLPADVKQLLQEGQLSMGQARTLLSLKKKSQISALAKRTIAESLTVRQLEQLVNQMNQTKAAKVAKTKIKSP
YIQASENQLVDKFDTKVNIAMNSKGRGKIEIDYGTVEDLNRILALLDVNID

Nucleotide


Download         Length: 876 bp        

>NTDB_id=1032487 MFPB16_RS00085 WP_016264319.1 18960..19835(+) (spo0J) [Latilactobacillus sakei strain MFPB16A1401]
ATGGTCAATAAAAATGGTAAAGGACTCGGTCGAGGGCTCGAAGCTGTTTTTTCAGCATTTGAGGGACCCAATAAGAATCG
TGCGGATGAACTCGTTGAAGAGATTGCCCTCGAGGATATTCGTCCTAATCCTTATCAACCACGTAAAACGTTTGATGAAG
CGGCACTAGCGGAACTTGCTGCTTCCATTAAAAAATCAGGCGTTTTCCAACCGATTATTGTGCGTAAAAGCATTAATGGT
TACGAATTAATCGCTGGCGAACGTCGTTTCCGTGCTTCTAAATTAGCTGGCAAAACTACGATTCCAGCGATTACCCGTCA
ATTCGATGAAGAAGCGATGATGGAAATTGCAGTCTTGGAAAATCTTCAACGGGAAGATTTAACACCGCTAGAAGAAGCGC
AAGCCTACGACACCCTTTTGAAGAAGTTAAACTTAACGCAAGCTGAAGTGTCAGAACGCTTAGGCAAGAGTCGCCCTTAC
ATTGCCAATTACTTACGCCTGTTGGGCTTACCAGCAGACGTTAAGCAATTGTTGCAAGAAGGCCAACTCTCAATGGGACA
AGCACGGACGCTTTTATCATTGAAGAAAAAGAGTCAAATTAGCGCCCTCGCCAAGCGGACGATTGCCGAAAGTTTAACGG
TGCGCCAATTAGAACAACTCGTCAACCAAATGAATCAAACCAAAGCGGCTAAAGTCGCTAAGACTAAGATTAAATCACCT
TACATTCAAGCGAGTGAAAACCAATTAGTCGATAAATTTGATACCAAGGTTAATATTGCGATGAATAGTAAGGGCCGGGG
TAAAATCGAAATTGATTACGGCACGGTAGAGGATTTAAACCGAATCTTGGCTTTACTAGATGTCAATATTGATTAG

Domains

Predicted by InterProScan.

Helix-turn-helix (HTH_3)

(139-166)

HTH domain found in ParB protein (HTH_ParB)

(173-223)

ParB/Sulfiredoxin domain (ParB_N)

(33-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

42.629

86.254

0.368

Multiple sequence alignment