Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   MFPB19_RS07765 Genome accession   NZ_LT960784
Coordinates   1540176..1540982 (-) Length   268 a.a.
NCBI ID   WP_099713073.1    Uniprot ID   -
Organism   Latilactobacillus sakei isolate MFPB19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1535176..1545982
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MFPB19_RS07740 (MFPB19_1611) - 1535570..1536001 (+) 432 WP_035146359.1 GNAT family N-acetyltransferase -
  MFPB19_RS07745 (MFPB19_1612) - 1536077..1536550 (+) 474 WP_035146355.1 hypothetical protein -
  MFPB19_RS07750 (MFPB19_1613) - 1536701..1538401 (+) 1701 WP_231953431.1 glycosyltransferase family 8 protein -
  MFPB19_RS07755 (MFPB19_1614) - 1538463..1538999 (-) 537 WP_011375166.1 DUF402 domain-containing protein -
  MFPB19_RS07760 (MFPB19_1615) mutY 1539086..1540189 (-) 1104 WP_076632336.1 A/G-specific adenine glycosylase -
  MFPB19_RS07765 (MFPB19_1616) recX 1540176..1540982 (-) 807 WP_099713073.1 recombination regulator RecX Regulator
  MFPB19_RS07770 (MFPB19_1617) - 1540984..1541163 (-) 180 WP_011375169.1 hypothetical protein -
  MFPB19_RS07775 (MFPB19_1618) rlmD 1541551..1542942 (+) 1392 WP_099713074.1 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD -
  MFPB19_RS07780 (MFPB19_1620) - 1543122..1543535 (-) 414 WP_231953432.1 DUF805 domain-containing protein -
  MFPB19_RS07785 (MFPB19_1621) - 1543626..1544096 (+) 471 WP_011375172.1 nucleoside 2-deoxyribosyltransferase -
  MFPB19_RS07790 (MFPB19_1622) - 1544183..1544425 (+) 243 WP_099713075.1 hypothetical protein -

Sequence

Protein


Download         Length: 268 a.a.        Molecular weight: 31085.99 Da        Isoelectric Point: 6.0698

>NTDB_id=1032477 MFPB19_RS07765 WP_099713073.1 1540176..1540982(-) (recX) [Latilactobacillus sakei isolate MFPB19]
MPQITKITSQKQKGRYNIFIDEQFAFGVTESVLIKFRLAKGLEIDSSLQRDIQKEDDNAKSYQLALNYLSHQLRTEKELT
QYLRDHEITPEGIETSLTKLRELHYLDDQDYADSYVRTVINTSDKGPKVVRQKLIQKGVSANHIDQALTLYTDEEQVTVG
LATAQKLAKKYRHSSFFEQQQKIKQGLMQKGFGGDNLSRIIDELALEEDSDSEADALAALGEKKWRRYRLLEPRERRMKM
QQALYRKGFNIDAINRFIDDQEVSDDTE

Nucleotide


Download         Length: 807 bp        

>NTDB_id=1032477 MFPB19_RS07765 WP_099713073.1 1540176..1540982(-) (recX) [Latilactobacillus sakei isolate MFPB19]
ATGCCACAGATTACTAAAATTACCTCACAAAAACAAAAAGGGCGCTATAACATTTTTATCGACGAGCAGTTTGCCTTTGG
GGTGACTGAAAGTGTCTTAATCAAGTTTCGGCTTGCAAAAGGGCTCGAAATCGATAGTAGCTTACAACGCGACATTCAAA
AAGAAGACGACAATGCCAAGTCCTATCAACTGGCCTTGAATTATTTAAGTCACCAATTACGAACGGAAAAAGAATTAACA
CAATACTTGCGTGATCATGAAATTACGCCAGAAGGCATTGAAACCAGTTTGACAAAATTACGCGAACTACATTATTTGGA
TGATCAGGATTACGCGGACAGTTATGTTAGAACGGTGATTAATACTTCGGATAAGGGGCCTAAAGTGGTTCGACAAAAAT
TGATTCAAAAAGGGGTTAGTGCTAATCATATCGATCAAGCATTGACGTTATATACAGATGAAGAACAAGTGACAGTCGGC
TTAGCAACTGCCCAAAAGCTAGCGAAGAAGTACCGCCACAGTTCGTTCTTCGAACAACAGCAAAAGATTAAACAAGGCTT
GATGCAAAAGGGCTTCGGTGGTGATAATTTAAGTCGGATTATTGACGAATTAGCGCTTGAAGAAGACAGTGATAGTGAAG
CAGATGCATTGGCAGCCCTTGGCGAGAAAAAATGGCGCCGTTACCGCTTATTAGAACCGCGCGAGCGGCGGATGAAGATG
CAACAAGCACTTTACCGGAAAGGATTTAATATTGATGCAATCAACCGTTTCATCGACGACCAAGAAGTATCAGATGACAC
CGAGTGA

Domains

Predicted by InterProScan.

RecX family (RecX_HTH2)

(83-203)

RecX family (RecX_HTH2)

(204-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

37.643

98.134

0.369