Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   QUE23_RS07155 Genome accession   NZ_AP028022
Coordinates   1361982..1362404 (+) Length   140 a.a.
NCBI ID   WP_286348383.1    Uniprot ID   -
Organism   Helicobacter sp. NHP21005 strain NHP21-005     
Function   integration of short DNA fragment (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1356982..1367404
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUE23_RS07130 (NHP21005_14660) - 1358428..1358610 (-) 183 WP_286348378.1 hypothetical protein -
  QUE23_RS07135 (NHP21005_14670) - 1358607..1358948 (-) 342 WP_286348379.1 hypothetical protein -
  QUE23_RS07140 (NHP21005_14680) murC 1358945..1360279 (-) 1335 WP_286348380.1 UDP-N-acetylmuramate--L-alanine ligase -
  QUE23_RS07145 (NHP21005_14690) - 1360273..1361388 (-) 1116 WP_286348381.1 succinyldiaminopimelate transaminase -
  QUE23_RS07150 (NHP21005_14700) - 1361552..1362001 (+) 450 WP_286348382.1 hypothetical protein -
  QUE23_RS07155 (NHP21005_14710) uvrC 1361982..1362404 (+) 423 WP_286348383.1 GIY-YIG nuclease family protein Machinery gene
  QUE23_RS10020 - 1362722..1363238 (+) 517 Protein_1405 hypothetical protein -
  QUE23_RS07170 (NHP21005_14730) - 1363241..1363486 (-) 246 WP_053825701.1 RNA-binding protein -
  QUE23_RS07175 (NHP21005_14740) - 1363593..1364825 (-) 1233 WP_286349437.1 ABC transporter permease -

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 16131.81 Da        Isoelectric Point: 9.6786

>NTDB_id=103238 QUE23_RS07155 WP_286348383.1 1361982..1362404(+) (uvrC) [Helicobacter sp. NHP21005 strain NHP21-005]
MDRKTLENLPTTSGVYLYFDAKDNLLYVGKAKNLQKRILSYFKIQGEQLVPNPKNSVRIQRMTSQIAHLQVQTTASEEEA
LLLENKLIKTKQPKYNILLKDSKTYPYICLDLNKPYPTLERTREPLEGCRCFLAPLASPL

Nucleotide


Download         Length: 423 bp        

>NTDB_id=103238 QUE23_RS07155 WP_286348383.1 1361982..1362404(+) (uvrC) [Helicobacter sp. NHP21005 strain NHP21-005]
ATGGATCGCAAAACCCTTGAGAATCTCCCCACTACCAGTGGGGTTTATCTGTATTTTGACGCGAAAGATAACCTGCTCTA
TGTCGGTAAGGCAAAGAATTTACAAAAACGCATTTTGAGTTACTTTAAAATACAAGGCGAGCAACTCGTCCCTAATCCTA
AAAACAGCGTCCGTATCCAACGGATGACAAGCCAAATCGCCCATTTGCAAGTGCAAACCACAGCAAGCGAAGAAGAAGCC
CTACTTTTAGAAAATAAACTCATTAAAACCAAACAACCCAAATACAACATCCTTTTAAAAGACTCCAAAACCTACCCCTA
CATTTGCCTAGACTTAAACAAACCCTACCCCACCCTAGAGCGCACCAGAGAGCCCCTAGAAGGGTGTAGGTGTTTTTTGG
CCCCTTTAGCCTCGCCTCTTTAG

Domains

Predicted by InterproScan.

GIY-YIG catalytic domain (GIY-YIG)

(13-96)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Helicobacter pylori 26695

51.471

97.143

0.5

Multiple sequence alignment