Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   LSAF01_RS06005 Genome accession   NZ_LT960777
Coordinates   1194255..1194968 (+) Length   237 a.a.
NCBI ID   WP_016265311.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain FLEC01     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1189255..1199968
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS05985 (LSAF01_1206) - 1189628..1190428 (-) 801 WP_011374895.1 ChbG/HpnK family deacetylase -
  LSAF01_RS05990 (LSAF01_1207) - 1190437..1190928 (-) 492 WP_231953162.1 PTS glucose transporter subunit IIA -
  LSAF01_RS05995 - 1190942..1192590 (-) 1649 Protein_1168 alpha,alpha-phosphotrehalase -
  LSAF01_RS06000 (LSAF01_1210) - 1192604..1194082 (-) 1479 WP_056948747.1 PTS transporter subunit EIIC -
  LSAF01_RS06005 (LSAF01_1211) treR 1194255..1194968 (+) 714 WP_016265311.1 trehalose operon repressor Regulator
  LSAF01_RS06010 (LSAF01_1212) - 1195032..1195469 (-) 438 WP_056948751.1 hypothetical protein -
  LSAF01_RS06015 (LSAF01_1213) - 1195574..1198120 (-) 2547 WP_099947671.1 YfhO family protein -
  LSAF01_RS06020 (LSAF01_1214) - 1198286..1199152 (-) 867 WP_056948755.1 GRP family sugar transporter -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26798.60 Da        Isoelectric Point: 6.5879

>NTDB_id=1032296 LSAF01_RS06005 WP_016265311.1 1194255..1194968(+) (treR) [Latilactobacillus sakei strain FLEC01]
MSKKYEIIYRELVHKITNHVYPANSFLPSENELATAYGTSRETVRKALASLLENGFIHKIKGKGSLVLDFDKYAFPISGL
TSYRELDSLFEMHTQTTVLQLQKATVPQAPFHLDPTEILPATYIQRLRTVDGEPIVIDNDYVLTSVVPEISRAVAQDSLY
HYFEQELGLTIGYGNKEFTVIPATEEQCAILKLAPNSAVVSVKGITHLQDNTLIQFTESIHRADKFKFIEHARRQSI

Nucleotide


Download         Length: 714 bp        

>NTDB_id=1032296 LSAF01_RS06005 WP_016265311.1 1194255..1194968(+) (treR) [Latilactobacillus sakei strain FLEC01]
ATGTCGAAAAAATATGAAATAATCTACCGCGAACTCGTCCATAAAATTACGAACCATGTTTATCCAGCCAACTCATTCTT
ACCCAGCGAAAACGAACTCGCAACAGCGTATGGTACCTCACGCGAAACAGTCCGCAAAGCACTCGCTAGCCTTTTAGAAA
ATGGCTTCATTCATAAGATCAAAGGCAAAGGCTCTTTAGTCCTTGATTTTGATAAATACGCCTTTCCCATTTCCGGCTTG
ACCAGTTACCGCGAATTGGATAGTCTCTTTGAAATGCACACGCAAACAACAGTCCTACAACTCCAAAAAGCAACCGTCCC
ACAAGCGCCTTTTCATTTAGACCCCACAGAGATTCTACCCGCGACCTATATTCAACGGTTACGGACCGTTGATGGTGAAC
CAATTGTTATCGATAACGACTACGTTCTAACCAGTGTTGTCCCAGAAATCTCACGGGCAGTCGCTCAGGATTCACTTTAT
CACTACTTTGAACAAGAATTGGGTCTAACTATTGGTTATGGGAATAAAGAATTCACTGTTATCCCTGCAACCGAAGAACA
GTGTGCCATTTTAAAACTCGCCCCTAATAGTGCGGTCGTTAGTGTTAAAGGTATCACTCATCTTCAGGATAATACCTTAA
TTCAATTTACCGAATCCATTCACCGGGCTGATAAATTTAAGTTTATTGAACACGCGCGCCGCCAATCAATTTAA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, gntR family (GntR)

(5-67)

UTRA domain (UTRA)

(120-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

37.339

98.312

0.367