Detailed information    

insolico Bioinformatically predicted

Overview

Name   recS   Type   Machinery gene
Locus tag   LSAF01_RS05105 Genome accession   NZ_LT960777
Coordinates   1016538..1017983 (-) Length   481 a.a.
NCBI ID   WP_011374722.1    Uniprot ID   Q38WV9
Organism   Latilactobacillus sakei strain FLEC01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1011538..1022983
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LSAF01_RS05080 (LSAF01_1020) - 1011710..1011985 (-) 276 WP_011374717.1 HU family DNA-binding protein -
  LSAF01_RS05085 (LSAF01_1021) der 1012192..1013502 (-) 1311 WP_016265173.1 ribosome biogenesis GTPase Der -
  LSAF01_RS05090 (LSAF01_1022) rpsA 1013736..1014947 (-) 1212 WP_025015758.1 30S ribosomal protein S1 -
  LSAF01_RS05095 (LSAF01_1023) cmk 1015042..1015701 (-) 660 WP_011374720.1 (d)CMP kinase -
  LSAF01_RS05100 (LSAF01_1024) - 1015768..1016469 (-) 702 WP_056946639.1 LysM peptidoglycan-binding domain-containing protein -
  LSAF01_RS05105 (LSAF01_1025) recS 1016538..1017983 (-) 1446 WP_011374722.1 RecQ family ATP-dependent DNA helicase Machinery gene
  LSAF01_RS05110 (LSAF01_1026) - 1017980..1019008 (-) 1029 WP_011374723.1 helix-turn-helix domain-containing protein -
  LSAF01_RS05115 (LSAF01_1027) - 1019045..1019275 (+) 231 WP_011374724.1 ferredoxin -
  LSAF01_RS05120 (LSAF01_1028) - 1019353..1019928 (-) 576 WP_056946643.1 ECF transporter S component -
  LSAF01_RS05125 (LSAF01_1029) - 1020243..1021013 (-) 771 WP_011374726.1 pseudouridine synthase -
  LSAF01_RS05130 (LSAF01_1030) scpB 1021016..1021639 (-) 624 WP_099947663.1 SMC-Scp complex subunit ScpB -
  LSAF01_RS05135 (LSAF01_1031) - 1021623..1022378 (-) 756 WP_056946646.1 segregation and condensation protein A -
  LSAF01_RS05140 (LSAF01_1032) - 1022387..1022755 (-) 369 WP_011374729.1 hypothetical protein -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 54369.15 Da        Isoelectric Point: 5.4500

>NTDB_id=1032283 LSAF01_RS05105 WP_011374722.1 1016538..1017983(-) (recS) [Latilactobacillus sakei strain FLEC01]
MTSEQLIYDQLAQHFGYSTFKPGQLAVIKSVLAGQETLAVLPTGTGKSLCYQLPAYILGHTTVIVSPLIALMQDQVAQLN
YQGEKRAVAINSNLVPQQKYQLLTHLADYRFIFMAPETISQPEVIQALQRCQIDLFVVDEAHCISQWGIDFRPDYLVLAA
IKAQLQPTATLALTATANDRVRQDILNKLALKNAAQIMTSVDRPNIYLGVSQQPDEQAKNQFLANLVKKSQGPGIVYFSS
RQKTMAIATFLQQETDLKIAYYHAALSTQERYLIQQQFMQGQLDLICTTNAFGMGINKADIRFVIHYHLPQNIESYLQEI
GRAGRDGQAAYALVLTTPQDLYLQQSLVSFGIPEPGLIRRYYQEPQLFKQSQGSEFELLRRYQQLGMTEEEVTALLDNRQ
TEKQFSLQTMLDYLTLKGCRRQFIVNYFDQAPKTIEHSETCCGEQDSTDFLAQLDLEQAINYKTAETVVLTGWTGILDQL
F

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=1032283 LSAF01_RS05105 WP_011374722.1 1016538..1017983(-) (recS) [Latilactobacillus sakei strain FLEC01]
ATGACTTCTGAACAACTCATTTATGACCAGTTAGCGCAGCACTTTGGCTATTCAACCTTTAAACCGGGCCAGTTAGCGGT
TATTAAGTCGGTACTTGCTGGGCAGGAGACATTAGCCGTTTTACCAACTGGGACCGGGAAATCGCTGTGTTATCAATTAC
CGGCCTATATCTTGGGGCATACGACTGTGATTGTCTCGCCACTAATCGCATTAATGCAAGATCAGGTCGCCCAATTGAAT
TATCAAGGGGAAAAACGAGCTGTCGCCATTAATTCTAATTTAGTGCCTCAGCAAAAATACCAGTTACTGACGCATTTAGC
GGATTACCGCTTTATTTTTATGGCACCGGAGACTATCAGTCAACCAGAAGTGATTCAGGCGCTTCAACGTTGTCAAATCG
ATTTGTTTGTGGTTGATGAGGCCCATTGTATTTCACAGTGGGGAATTGACTTTAGACCGGACTATTTAGTTTTAGCAGCC
ATTAAGGCCCAATTACAGCCAACTGCAACACTGGCTTTGACGGCGACTGCCAATGATCGTGTACGCCAAGATATTTTGAA
TAAGTTGGCGTTAAAAAACGCGGCCCAAATCATGACCTCTGTTGATCGCCCCAATATCTATTTGGGCGTGAGCCAACAAC
CTGATGAACAAGCGAAGAACCAATTTTTAGCCAACTTAGTGAAAAAAAGCCAGGGTCCCGGGATTGTTTATTTTTCAAGT
CGGCAAAAGACAATGGCGATTGCAACCTTTTTACAACAGGAGACTGATCTAAAAATTGCTTATTACCACGCAGCGTTATC
AACCCAGGAGCGGTATTTAATTCAACAACAATTTATGCAAGGACAACTCGATTTAATTTGTACCACCAATGCTTTTGGGA
TGGGGATTAACAAAGCGGATATTCGCTTTGTGATTCATTATCACTTGCCACAAAATATCGAAAGTTATCTACAAGAAATT
GGACGAGCAGGTCGAGATGGGCAAGCAGCGTATGCTTTAGTCCTAACAACCCCGCAAGATTTATATTTACAACAATCACT
CGTATCATTTGGGATTCCGGAACCCGGACTCATTCGGCGCTATTATCAGGAACCGCAATTATTTAAACAAAGTCAAGGCA
GTGAATTTGAACTGTTGCGTCGTTACCAACAACTGGGGATGACCGAAGAAGAGGTGACTGCCTTATTGGATAATCGCCAA
ACTGAAAAACAATTTTCATTACAAACAATGTTGGATTATTTGACGCTCAAGGGCTGCCGGCGTCAATTTATTGTGAACTA
TTTTGACCAGGCACCAAAGACGATTGAACACAGCGAAACGTGTTGCGGGGAACAGGATTCGACCGACTTTTTAGCACAAT
TAGACTTAGAACAGGCTATTAATTATAAAACCGCTGAAACCGTTGTTCTGACTGGTTGGACGGGAATCTTGGACCAATTA
TTTTAG

Domains

Predicted by InterProScan.

Helicase conserved C-terminal domain (Helicase_C)

(219-326)

DEAD/DEAH box helicase (DEAD)

(22-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q38WV9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recS Bacillus subtilis subsp. subtilis str. 168

41.372

93.971

0.389