Detailed information
Bioinformatically predicted
Overview
| Name | xerS | Type | Machinery gene |
| Locus tag | LSAF01_RS04850 | Genome accession | NZ_LT960777 |
| Coordinates | 961891..962949 (+) | Length | 352 a.a. |
| NCBI ID | WP_011374669.1 | Uniprot ID | Q38X12 |
| Organism | Latilactobacillus sakei strain FLEC01 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 956891..967949
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSAF01_RS04825 (LSAF01_0967) | - | 957183..957683 (-) | 501 | WP_076632507.1 | DUF1836 domain-containing protein | - |
| LSAF01_RS04830 (LSAF01_0968) | trhA | 957844..958482 (+) | 639 | WP_099947792.1 | PAQR family membrane homeostasis protein TrhA | - |
| LSAF01_RS04835 (LSAF01_0969) | - | 958511..959353 (+) | 843 | WP_061826996.1 | DegV family protein | - |
| LSAF01_RS04840 (LSAF01_0970) | - | 959481..960062 (+) | 582 | WP_076632505.1 | TetR/AcrR family transcriptional regulator | - |
| LSAF01_RS04845 (LSAF01_0971) | - | 960064..961071 (+) | 1008 | WP_099947659.1 | NADP-dependent oxidoreductase | - |
| LSAF01_RS04850 (LSAF01_0972) | xerS | 961891..962949 (+) | 1059 | WP_011374669.1 | tyrosine recombinase XerS | Machinery gene |
| LSAF01_RS04855 (LSAF01_0973) | thiT | 963163..963765 (+) | 603 | WP_011374670.1 | energy-coupled thiamine transporter ThiT | - |
| LSAF01_RS04860 (LSAF01_0974) | - | 963805..965598 (-) | 1794 | WP_041821096.1 | heavy metal translocating P-type ATPase | - |
| LSAF01_RS04865 (LSAF01_0975) | - | 965699..966052 (-) | 354 | WP_056947626.1 | hypothetical protein | - |
| LSAF01_RS04870 (LSAF01_0976) | - | 966109..967032 (-) | 924 | WP_011374673.1 | manganese-dependent inorganic pyrophosphatase | - |
Sequence
Protein
Download Length: 352 a.a. Molecular weight: 40804.78 Da Isoelectric Point: 9.2979
>NTDB_id=1032279 LSAF01_RS04850 WP_011374669.1 961891..962949(+) (xerS) [Latilactobacillus sakei strain FLEC01]
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
MDQQRYLELCEQRLADLPDYVRKFYINRQANAYSSATLYQYLQEYVRFFSWLIDEQIVTVQTTKDIPLVALDKMKLEDIE
LYKIFLMNKRKVNNHKLSFQAVNRSINALNALWYFLTIEAEQADGEPYFYRNVMKKVKLLKSSETMATRSRHIGQKLLTG
DKKHDFITFMQVDYPSALSNRQLASYKQNCERDIAICVLALTTGIRLSELAQANVSDLNLEQLTITVIRKGGQQDTVPIA
PWGLPYLQDYVQIRQQRYLAANERALFVTKYRGQAKRISNYAIEKLVAKYSEAFGVRLTPHKFRHTLATDLMSATHSETI
VATQLGQTTTQATHLYTHVVDDEQRSAMDKLE
Nucleotide
Download Length: 1059 bp
>NTDB_id=1032279 LSAF01_RS04850 WP_011374669.1 961891..962949(+) (xerS) [Latilactobacillus sakei strain FLEC01]
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGTAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCTGATGGCGAACCTTATTTTTACCGGAACGTCA
TGAAAAAAGTTAAACTCCTGAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGC
GATAAAAAACACGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAA
GCAAAATTGTGAACGAGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
ATGGACCAACAACGTTATCTCGAACTATGTGAACAACGCTTGGCGGATCTTCCCGATTACGTCCGTAAATTTTATATTAA
TCGGCAAGCCAATGCATACTCCTCTGCAACGCTCTATCAATATCTCCAAGAATACGTCCGCTTCTTCTCCTGGTTAATTG
ACGAACAAATCGTTACTGTTCAAACGACTAAGGATATCCCTCTTGTTGCGCTTGATAAGATGAAATTAGAAGATATCGAA
CTCTATAAGATCTTTTTAATGAATAAACGAAAAGTAAATAATCACAAGCTCTCCTTTCAGGCTGTTAATCGCTCTATCAA
CGCTTTGAATGCGCTCTGGTACTTCCTGACGATTGAAGCCGAACAAGCTGATGGCGAACCTTATTTTTACCGGAACGTCA
TGAAAAAAGTTAAACTCCTGAAATCTTCCGAGACAATGGCCACTCGTTCCCGCCATATCGGTCAAAAGTTGCTCACCGGC
GATAAAAAACACGACTTCATTACCTTTATGCAAGTCGACTATCCCAGTGCGCTCTCTAATCGCCAACTCGCTTCTTATAA
GCAAAATTGTGAACGAGATATTGCGATTTGCGTATTGGCACTCACTACCGGCATTCGTCTTTCCGAACTCGCCCAAGCTA
ACGTTTCTGATTTAAACCTTGAACAACTAACAATTACGGTTATTCGCAAAGGCGGTCAACAAGATACCGTGCCGATCGCA
CCTTGGGGTTTACCTTATCTGCAAGATTACGTTCAAATCCGGCAACAACGCTATTTAGCCGCTAACGAACGGGCCTTATT
TGTCACAAAGTATCGCGGTCAAGCGAAGCGAATCAGTAACTATGCCATTGAAAAACTGGTAGCTAAGTACTCTGAAGCTT
TTGGCGTTCGACTAACGCCGCATAAATTCCGTCATACACTCGCAACCGATCTGATGTCAGCGACCCACAGCGAAACGATC
GTAGCGACCCAATTGGGCCAAACCACCACGCAGGCCACCCATTTGTATACGCACGTGGTTGATGACGAACAGCGCTCGGC
AATGGATAAGCTCGAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xerS | Streptococcus pneumoniae R6 |
45.787 |
100 |
0.463 |