Detailed information NTG1032255

Bioinformatically predicted

Overview

• Name: hexA
• Type: Machinery gene
• Locus tag: LSAF01_RS01830
• Genome accession: NZ_LT960777
• Coordinates: 384873..387476 (+)
• Length: 867 a.a.
• NCBI ID: WP_056947789.1
• Uniprot ID: -
• Organism: Latilactobacillus sakei strain FLEC01
• Function: DNA mismatch repair (predicted from homology) Homologous recombination

Genomic Context

Location: 379873..392476

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LSAF01_RS01815 (LSAF01_0386)	groL	379915..381540 (+)	1626	WP_035146245.1	chaperonin GroEL	-
LSAF01_RS09810	-	381578..381730 (-)	153	WP_155516314.1	hypothetical protein	-
LSAF01_RS01820 (LSAF01_0387)	-	382039..383868 (+)	1830	WP_016264636.1	APC family permease	-
LSAF01_RS01825 (LSAF01_0388)	-	384045..384851 (+)	807	WP_011374070.1	TIGR00282 family metallophosphoesterase	-
LSAF01_RS01830 (LSAF01_0389)	hexA	384873..387476 (+)	2604	WP_056947789.1	DNA mismatch repair protein MutS	Machinery gene
LSAF01_RS01835 (LSAF01_0390)	hexB	387500..389461 (+)	1962	WP_056947790.1	DNA mismatch repair endonuclease MutL	Machinery gene
LSAF01_RS01840 (LSAF01_0391)	-	389461..390006 (+)	546	WP_056947792.1	Maf family protein	-
LSAF01_RS01845	-	390019..390582 (+)	564	Protein_376	TIGR00730 family Rossman fold protein	-
LSAF01_RS01850 (LSAF01_0394)	ruvA	390993..391604 (+)	612	WP_011374075.1	Holliday junction branch migration protein RuvA	Machinery gene

Sequence

Protein

• Length: 867 a.a.
• Molecular weight: 96806.68 Da
• Isoelectric Point: 5.3178

>NTDB_id=1032255 LSAF01_RS01830 WP_056947789.1 384873..387476(+) (hexA) [Latilactobacillus sakei strain FLEC01]
MPQKTKETPMMAQYQKVKDQYPDAFLFYRLGDFYELFNDDAVKASQLLELTLTARNKNAADPIPMCGVPHHAAQNYIDIL
VDQGYKVAICEQMEDPKTAKGMVKREVVQLVTPGTVMDEKAGHAKQNNYLTAVVAQGDQFGFAYTDLSTGEMKVSQISSL
DVLLNEMLSLQTKEVVVNHDVPSEVVQAFVQQQILVSYQDEGADTAEVSFVSQNISQPLALAVIKQLVVYLATTQKRHLG
HLQRAQAYEPSQYLKLDHSAKMNLELTASLRTGHKSGTLLWLLDETKTAMGGRLLKQWLERPLLDLNQIKNRQNQVASFL
QHYFERTNLQEALTKVYDLERLAGRVAFGSVNGRDLIQLKTSLEQIPKIKDVLTGINETQAFDQALTRLDPVDDVRTLIE
TAINPDSPISVTDGGIIQDGYDEQLDQYRNAMSNGKQWLAQLEAQEREATGIHNLKIGFNRVFGYYIEVTRANLSSLPEG
RYERKQTLTNAERFITPELKEKEQLILEAEERSTALEYELFTQVREQVKLQIERLQTLAKGVAALDVLQSFAVVSESYHY
VQPTLRTDSREIDLVDGRHPVVEKVLGRQKYIPNAVQMGKETDMLLITGPNMSGKSTYMRQLALTVIMAQMGCFVPAKSA
NLPVFDQIFTRIGAADDLISGQSTFMVEMMEANRAIMSATANSLILFDEIGRGTATYDGMALAQAIIEYIHDHVHAKTLF
STHYHELTALADMLTALRNVHVGAVEENGELVFLHKMLAGPADKSYGIHVAKLAGMPETLLQRADVILGQLEDKPKAPVQ
PATVVPAQPAAAAVEEQMALFEPEVAAPVDKKTDKVVAAIKNFDLMSATPLEALNQLYEWQKQLNKH

Nucleotide

• Length: 2604 bp

>NTDB_id=1032255 LSAF01_RS01830 WP_056947789.1 384873..387476(+) (hexA) [Latilactobacillus sakei strain FLEC01]
ATGCCGCAAAAAACAAAAGAAACGCCAATGATGGCCCAATATCAAAAGGTTAAGGATCAATATCCAGACGCCTTTTTATT
TTATAGATTGGGTGATTTTTACGAATTATTCAATGACGATGCTGTTAAAGCATCACAACTTTTAGAATTAACGCTGACAG
CGCGTAATAAGAATGCAGCAGACCCCATTCCGATGTGTGGTGTGCCCCATCATGCAGCGCAAAACTACATTGATATTTTA
GTGGATCAAGGTTACAAGGTCGCCATTTGTGAACAGATGGAAGATCCTAAAACGGCTAAGGGCATGGTCAAACGCGAAGT
CGTTCAATTAGTAACACCTGGGACTGTGATGGACGAAAAAGCCGGTCACGCTAAACAAAATAATTATTTAACGGCAGTCG
TTGCACAGGGCGATCAATTTGGCTTCGCCTATACAGATTTATCCACAGGTGAAATGAAGGTTAGCCAAATCAGTAGTTTA
GATGTGTTATTAAACGAAATGTTGAGTTTACAAACCAAAGAAGTGGTTGTGAATCATGATGTCCCAAGCGAAGTCGTTCA
AGCCTTTGTCCAACAACAAATCTTGGTTTCTTATCAAGATGAGGGGGCCGATACGGCAGAGGTCAGTTTTGTTTCTCAAA
ACATCTCACAACCACTAGCGTTAGCCGTCATTAAACAATTAGTTGTTTATTTAGCAACGACGCAAAAGCGGCACTTGGGT
CATTTACAACGCGCCCAAGCCTATGAACCTTCTCAATACTTGAAGTTGGATCATTCGGCTAAGATGAACCTCGAATTGAC
GGCTTCATTACGAACTGGTCATAAGAGCGGGACGTTATTGTGGCTACTGGATGAAACAAAGACTGCGATGGGTGGTCGCT
TATTAAAACAATGGTTGGAACGACCATTGTTGGATTTAAACCAGATTAAGAACCGGCAAAACCAAGTCGCTAGTTTCTTA
CAGCATTACTTTGAACGGACGAACCTTCAAGAAGCCCTAACTAAAGTTTATGATTTGGAACGTCTAGCAGGCCGCGTTGC
TTTTGGGAGCGTTAATGGGCGCGATTTGATTCAATTAAAAACATCCTTAGAACAGATTCCAAAGATTAAAGATGTTTTGA
CGGGCATTAACGAAACGCAGGCTTTTGATCAAGCGTTAACGCGTTTGGATCCAGTTGATGATGTGCGGACGTTAATTGAA
ACAGCGATTAACCCGGATTCACCGATTTCAGTGACTGATGGTGGGATTATTCAAGATGGTTACGACGAACAACTTGATCA
ATACCGCAATGCGATGTCTAACGGCAAGCAGTGGTTGGCGCAATTAGAGGCGCAAGAACGAGAAGCTACGGGCATTCATA
ATTTGAAAATCGGCTTTAACCGCGTCTTTGGGTATTATATCGAAGTCACGCGGGCTAACTTGAGTTCATTACCGGAAGGG
CGGTATGAACGCAAACAAACGTTAACCAACGCCGAACGATTCATCACACCGGAATTAAAAGAAAAAGAACAACTGATTTT
AGAGGCGGAAGAACGCTCAACCGCTCTAGAATACGAATTGTTTACCCAAGTTCGGGAACAAGTGAAGTTACAAATTGAAC
GGCTCCAAACATTGGCTAAAGGCGTAGCGGCCCTAGATGTCTTGCAAAGTTTTGCGGTCGTCAGCGAAAGCTACCACTAT
GTCCAACCAACATTAAGAACTGATAGTCGCGAAATTGATTTAGTCGATGGCCGTCATCCGGTGGTTGAAAAGGTATTGGG
ACGCCAAAAATATATCCCCAATGCTGTTCAAATGGGCAAAGAAACGGATATGTTATTAATTACCGGACCTAATATGTCTG
GTAAAAGTACCTACATGCGGCAATTGGCCTTAACGGTCATCATGGCGCAAATGGGTTGTTTTGTACCTGCCAAGTCAGCG
AACTTGCCTGTATTTGACCAAATCTTTACCCGCATTGGTGCGGCAGATGATTTGATTTCAGGACAAAGTACGTTTATGGT
AGAAATGATGGAAGCCAACCGTGCGATTATGAGTGCGACCGCCAATAGTTTAATTCTCTTCGATGAAATTGGTCGGGGAA
CGGCCACTTATGATGGGATGGCCTTGGCGCAAGCGATTATCGAATATATCCATGATCACGTCCACGCCAAGACGCTCTTT
TCAACGCATTATCATGAACTGACGGCTTTAGCCGATATGTTGACCGCCCTTCGTAACGTGCATGTTGGTGCAGTTGAGGA
AAACGGCGAGTTGGTCTTCTTACACAAGATGTTGGCCGGACCTGCGGATAAGTCTTACGGGATTCATGTCGCTAAACTAG
CGGGCATGCCAGAAACCTTATTACAACGGGCCGATGTTATTTTAGGTCAATTAGAAGATAAACCAAAAGCACCGGTGCAA
CCAGCAACAGTCGTACCAGCACAACCGGCTGCAGCGGCTGTCGAAGAACAGATGGCGCTTTTTGAACCAGAAGTGGCGGC
CCCGGTCGATAAGAAAACAGATAAAGTGGTAGCGGCAATTAAGAATTTTGATTTGATGAGCGCCACACCACTAGAAGCCC
TCAATCAATTATATGAGTGGCAAAAGCAATTAAATAAACATTAA

Domains

Predicted by InterProScan.

• MutS domain III (MutS_III) (263-552)

• MutS domain II (MutS_II) (128-243)

• MutS domain I (MutS_I) (8-119)

• MutS domain V (MutS_V) (605-792)

• MutS family domain IV (MutS_IV) (420-512)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
hexA	Streptococcus pneumoniae R6	52.139	99.769	0.52
mutS	Pseudomonas stutzeri strain ATCC 17587	38.655	100	0.391