Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   ALC86_RS09260 Genome accession   NZ_LT907989
Coordinates   1985978..1986592 (-) Length   204 a.a.
NCBI ID   WP_000580359.1    Uniprot ID   Q9KR01
Organism   Vibrio cholerae strain A19     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1980978..1991592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ALC86_RS09235 ybgE 1981289..1981606 (-) 318 WP_001286617.1 cyd operon protein YbgE -
  ALC86_RS09240 cydX 1981599..1981706 (-) 108 WP_000270285.1 cytochrome bd-I oxidase subunit CydX -
  ALC86_RS09245 cydB 1981719..1982855 (-) 1137 WP_000460767.1 cytochrome d ubiquinol oxidase subunit II -
  ALC86_RS09250 cydA 1982873..1984459 (-) 1587 WP_000568056.1 cytochrome ubiquinol oxidase subunit I -
  ALC86_RS09255 ruvB 1984918..1985922 (-) 1005 WP_000568491.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  ALC86_RS09260 ruvA 1985978..1986592 (-) 615 WP_000580359.1 Holliday junction branch migration protein RuvA Machinery gene
  ALC86_RS09265 ruvC 1986689..1987210 (-) 522 WP_000111361.1 crossover junction endodeoxyribonuclease RuvC -
  ALC86_RS09270 cysS 1987298..1988677 (-) 1380 WP_000913180.1 cysteine--tRNA ligase -
  ALC86_RS09275 - 1988823..1989317 (+) 495 WP_000631302.1 peptidylprolyl isomerase -
  ALC86_RS09280 lpxH 1989358..1990098 (+) 741 WP_000557000.1 UDP-2,3-diacylglucosamine diphosphatase -
  ALC86_RS09285 - 1990194..1991408 (+) 1215 WP_001881603.1 EAL and HDOD domain-containing protein -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 22008.70 Da        Isoelectric Point: 5.0954

>NTDB_id=1032205 ALC86_RS09260 WP_000580359.1 1985978..1986592(-) (ruvA) [Vibrio cholerae strain A19]
MIGRLRGTLIEKLPPQILIEVGGIGYEVQMPMSCIYELPNIGEEAIIYTHFVVREDAQLLYGFNTVSERALFREVIKANG
VGPKMGLAILSGMTANQFVTCVEKEDISTLIKLPGVGKKTAERLVVEMKDRLKGWGAGDLFTPATDAAPVDSTPVIAQNA
QEEAMSALLALGYKPPQASKAVSQVAKAGMSSEELIREALKSMV

Nucleotide


Download         Length: 615 bp        

>NTDB_id=1032205 ALC86_RS09260 WP_000580359.1 1985978..1986592(-) (ruvA) [Vibrio cholerae strain A19]
GTGATTGGACGTCTTCGCGGTACGCTGATTGAAAAGTTACCTCCTCAAATTTTGATTGAGGTCGGTGGTATTGGCTATGA
AGTGCAAATGCCGATGAGCTGTATTTATGAACTGCCGAATATTGGGGAAGAAGCCATCATTTATACCCACTTTGTAGTTC
GAGAAGATGCACAGCTACTTTATGGCTTTAATACCGTTAGCGAACGCGCTCTGTTTCGTGAAGTAATCAAAGCCAATGGC
GTAGGGCCGAAAATGGGGCTTGCGATCCTCTCTGGCATGACAGCCAATCAGTTTGTGACTTGTGTGGAAAAAGAAGATAT
CTCTACCCTCATTAAATTACCGGGAGTCGGGAAGAAGACGGCTGAGCGATTGGTGGTGGAAATGAAAGATCGCCTGAAAG
GATGGGGAGCGGGTGACCTCTTTACACCTGCAACCGATGCGGCCCCTGTCGATTCTACGCCCGTGATTGCTCAAAATGCT
CAGGAAGAAGCCATGAGCGCGCTATTGGCGCTAGGTTACAAGCCCCCTCAAGCTTCCAAAGCGGTATCGCAAGTGGCTAA
AGCAGGAATGAGCAGTGAAGAGTTGATTCGTGAAGCGCTCAAATCTATGGTGTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-203)

RuvA N terminal domain (RuvA_N)

(1-62)

Helix-hairpin-helix domain (HHH_5)

(72-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9KR01

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

36.098

100

0.363