Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QQK36_RS14190 Genome accession   NZ_AP027978
Coordinates   2854487..2855116 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain VE-V11-M     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2849487..2860116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQK36_RS14175 (VEV11M_27590) helD 2849729..2851783 (-) 2055 WP_000420536.1 DNA helicase IV -
  QQK36_RS14180 (VEV11M_27600) yccF 2851906..2852352 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QQK36_RS14185 (VEV11M_27610) yccS 2852362..2854524 (+) 2163 WP_000875023.1 YccS family putative transporter -
  QQK36_RS14190 (VEV11M_27620) sxy/tfoX 2854487..2855116 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QQK36_RS14195 (VEV11M_27630) sulA 2855335..2855844 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  QQK36_RS14200 (VEV11M_27650) ompA 2856201..2857241 (+) 1041 WP_286611204.1 porin OmpA -
  QQK36_RS14205 (VEV11M_27660) matP 2857317..2857769 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  QQK36_RS14210 (VEV11M_27670) ycbZ 2857955..2859715 (+) 1761 WP_000156526.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=103219 QQK36_RS14190 WP_000839153.1 2854487..2855116(-) (sxy/tfoX) [Escherichia coli strain VE-V11-M]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=103219 QQK36_RS14190 WP_000839153.1 2854487..2855116(-) (sxy/tfoX) [Escherichia coli strain VE-V11-M]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment