Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CKV94_RS07990 Genome accession   NZ_LT906482
Coordinates   1581235..1583457 (+) Length   740 a.a.
NCBI ID   WP_223417308.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   DNA processing; DNA transport into the cytoplasm (predicted from homology)   
DNA processing DNA binding and uptake

Genomic Context

Location: 1576235..1588457
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS11550 (SAMEA4412678_01562) - 1577094..1577225 (+) 132 WP_003824352.1 hypothetical protein -
  CKV94_RS07965 (SAMEA4412678_01563) - 1577306..1577680 (+) 375 WP_003824353.1 hypothetical protein -
  CKV94_RS07970 (SAMEA4412678_01564) - 1577755..1578444 (-) 690 WP_003824354.1 ATP-binding cassette domain-containing protein -
  CKV94_RS07975 (SAMEA4412678_01565) modB 1578441..1579112 (-) 672 WP_003824355.1 molybdate ABC transporter permease subunit -
  CKV94_RS07980 (SAMEA4412678_01566) modA 1579371..1580129 (-) 759 WP_003824359.1 molybdate ABC transporter substrate-binding protein -
  CKV94_RS07985 (SAMEA4412678_01567) - 1580503..1581069 (+) 567 WP_080543253.1 L-threonylcarbamoyladenylate synthase -
  CKV94_RS07990 (SAMEA4412678_01568) comA 1581235..1583457 (+) 2223 WP_223417308.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  CKV94_RS07995 (SAMEA4412678_01569) dnaE 1583624..1587055 (+) 3432 WP_003824364.1 DNA polymerase III subunit alpha -
  CKV94_RS08000 (SAMEA4412678_01570) holA 1587322..1588329 (-) 1008 WP_003824366.1 DNA polymerase III subunit delta -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 80926.00 Da        Isoelectric Point: 8.8233

>NTDB_id=1032053 CKV94_RS07990 WP_223417308.1 1581235..1583457(+) (comA) [Eikenella corrodens strain NCTC10596]
MPAAHFVAVASASALLLALIGCFRRARGAWWLLCGLLYGVWRVQLALSQQWPAEPEFQRVRLDFQVASVAEASAQSVRFE
AWAQTEAGARFRLLVTDRYLREWRPGSRWRMTVRVRPTVGERNENGFDREAWALSQHIDGIASAARERVELPPDTGWQSR
WQNWRYERQQAWQQAAESYPNGAALMRALGGGGYGGLADEHWQAFRVLGINHLISVSGLHIGMVALAAAYLARLFLLRLP
MAEPRRWYLAAGLAAALFYSALAGFGVPIQRSLLMLAVFAWQWYRRGSPAPWRAWWQALAVVLLFDPLSALGVGFWFSFG
AVAALIWVAQGRLEAMPDDDALEGGWLRTAKHSGKWRIALRAQYAATLLGFWQAGQVFGTVPLAAPLANALLIPWFSWVL
VPLALLAVLLPFEGYLKMAAAISEYTMGAVVWAGGIVPTGALAHLPPLFWLAVLAALAVWLLPRGLGLRPWAALVLAASC
LYRTPAPEHGTAAVRIVDVGQGLALQVRTQNHWLLFDTGTAGAAQTQLVPNLLAQGLPPPDVLVLSHHDADHDGGFPAVQ
AAFAPHKLYAGQPEAYAGAAEWCAGGTTWEWDGVYFEFLTPPRNPEADDNEQSCVLRVLANGQAVLAGGDLGIAGERWLV
GTYGDSLHSQLLVLGHHGSRSSSDSAYLNTVAPEAAVAANGFANPYGHPAAIVRHRLSAHRIRLYTTARSGQLDFVLGQG
GAMQPQCLGRRFWQRKPFEE

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=1032053 CKV94_RS07990 WP_223417308.1 1581235..1583457(+) (comA) [Eikenella corrodens strain NCTC10596]
TTGCCGGCAGCACATTTTGTTGCCGTTGCCTCAGCTTCGGCGCTGCTGCTCGCCCTGATTGGCTGCTTCCGGCGCGCCCG
TGGGGCGTGGTGGCTGCTGTGCGGGCTGCTTTACGGCGTGTGGCGGGTGCAGTTGGCGCTATCGCAGCAGTGGCCGGCGG
AACCGGAGTTTCAACGGGTGCGGCTGGATTTTCAGGTAGCCTCGGTGGCGGAGGCATCGGCGCAGTCGGTGCGGTTTGAG
GCTTGGGCACAAACGGAAGCGGGGGCGCGGTTTCGGCTGCTGGTGACCGACCGGTATTTGCGCGAGTGGCGGCCGGGCAG
CCGCTGGCGGATGACGGTTCGGGTGCGGCCTACGGTGGGCGAGCGCAATGAAAACGGCTTCGACCGCGAGGCTTGGGCGT
TGAGCCAGCATATCGACGGCATAGCTTCGGCTGCCCGCGAGCGGGTGGAACTGCCGCCGGACACGGGCTGGCAATCGCGT
TGGCAAAACTGGCGCTACGAGCGGCAGCAGGCTTGGCAGCAGGCGGCGGAAAGCTACCCGAACGGGGCAGCGCTGATGCG
GGCTTTGGGCGGCGGCGGATACGGCGGGCTGGCGGATGAGCATTGGCAGGCGTTTCGGGTGTTGGGCATCAATCATCTGA
TTAGCGTGTCGGGGCTGCACATCGGTATGGTGGCGCTGGCGGCAGCGTATTTGGCGCGGCTTTTTCTGCTGCGCCTGCCG
ATGGCCGAGCCGCGACGCTGGTATTTGGCGGCGGGCTTGGCAGCGGCTTTGTTTTATTCGGCCTTGGCCGGCTTCGGCGT
GCCGATTCAGCGCAGTTTGCTGATGCTGGCGGTGTTTGCCTGGCAATGGTATCGGCGCGGCAGCCCTGCGCCGTGGCGGG
CTTGGTGGCAGGCTTTGGCCGTGGTGCTGCTGTTCGACCCGCTCTCGGCTTTGGGCGTGGGCTTTTGGTTTTCCTTCGGC
GCGGTGGCGGCGCTGATTTGGGTGGCACAAGGGCGGCTGGAGGCCATGCCGGATGACGATGCACTAGAAGGCGGCTGGCT
GCGTACGGCCAAGCATTCCGGCAAATGGCGCATCGCGCTGCGTGCCCAATATGCGGCCACGCTGTTGGGGTTTTGGCAGG
CCGGGCAGGTATTCGGCACCGTGCCGCTGGCCGCGCCTTTGGCCAATGCGCTGCTGATTCCGTGGTTTTCCTGGGTGTTG
GTGCCGCTAGCTTTGCTGGCGGTGCTGCTGCCGTTTGAAGGCTACCTGAAAATGGCGGCTGCCATCAGCGAATACACCAT
GGGCGCGGTGGTGTGGGCGGGCGGCATCGTGCCCACCGGCGCACTGGCGCATTTGCCGCCGCTGTTTTGGCTGGCCGTGT
TGGCCGCGCTGGCGGTGTGGCTATTACCGCGCGGCCTGGGATTGCGGCCTTGGGCGGCGCTGGTGTTGGCGGCATCCTGC
CTGTATCGCACGCCCGCGCCGGAGCACGGCACGGCGGCGGTGCGGATTGTGGACGTAGGGCAGGGGCTTGCCTTGCAGGT
GCGCACGCAAAACCATTGGCTGCTGTTCGACACCGGCACGGCAGGGGCGGCACAGACGCAGCTGGTGCCCAACCTGCTGG
CGCAGGGGCTGCCGCCGCCCGATGTGCTGGTGCTCTCGCATCACGATGCCGACCACGACGGTGGCTTCCCCGCCGTTCAG
GCAGCCTTTGCGCCGCACAAACTGTATGCCGGCCAGCCGGAAGCCTATGCCGGCGCAGCCGAATGGTGCGCCGGCGGCAC
CACGTGGGAATGGGACGGCGTGTATTTTGAATTCCTCACCCCGCCGCGAAACCCCGAAGCCGATGACAACGAACAAAGCT
GCGTGTTGCGCGTGTTGGCCAACGGGCAGGCCGTGCTGGCGGGCGGCGATTTGGGCATCGCGGGCGAGCGCTGGCTGGTG
GGCACATATGGCGATTCGCTGCACAGCCAATTATTGGTGCTGGGGCACCACGGCAGCCGCTCTTCATCTGATTCGGCCTA
TCTGAATACCGTGGCGCCTGAAGCAGCGGTGGCGGCCAACGGTTTTGCCAACCCCTACGGCCACCCCGCCGCCATTGTGC
GGCACCGCCTCTCCGCCCACCGCATCCGGCTCTACACCACCGCCCGCAGCGGGCAGCTGGATTTCGTGCTGGGGCAGGGC
GGGGCAATGCAGCCGCAGTGCTTGGGCAGGAGGTTTTGGCAGCGCAAGCCGTTTGAGGAATGA

Domains

Predicted by InterProScan.

Competence protein (Competence)

(195-462)

Domain of unknown function (DUF4131) (DUF4131)

(8-144)

Metallo-beta-lactamase superfamily (Lactamase_B)

(500-653)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Neisseria gonorrhoeae MS11

49.44

96.486

0.477