Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CKV94_RS00155 Genome accession   NZ_LT906482
Coordinates   32643..33344 (-) Length   233 a.a.
NCBI ID   WP_003822898.1    Uniprot ID   -
Organism   Eikenella corrodens strain NCTC10596     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 27643..38344
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV94_RS11005 (SAMEA4412678_00025) - 28731..29066 (+) 336 WP_141744186.1 hypothetical protein -
  CKV94_RS00130 (SAMEA4412678_00026) - 29137..29619 (+) 483 WP_003822891.1 copper resistance protein NlpE -
  CKV94_RS00135 (SAMEA4412678_00027) yfaE 29739..30047 (+) 309 WP_003822892.1 class I ribonucleotide reductase maintenance protein YfaE -
  CKV94_RS00140 (SAMEA4412678_00028) - 30179..30589 (-) 411 WP_003822894.1 hypothetical protein -
  CKV94_RS00145 (SAMEA4412678_00029) - 30582..31886 (-) 1305 WP_003822896.1 homoserine dehydrogenase -
  CKV94_RS00150 (SAMEA4412678_00030) - 32163..32525 (+) 363 WP_003822897.1 Mth938-like domain-containing protein -
  CKV94_RS00155 (SAMEA4412678_00031) radC 32643..33344 (-) 702 WP_003822898.1 DNA repair protein RadC Machinery gene
  CKV94_RS00160 (SAMEA4412678_00032) hfq 33639..33899 (+) 261 WP_003822900.1 RNA chaperone Hfq -
  CKV94_RS00165 (SAMEA4412678_00033) - 34003..34704 (+) 702 WP_143336557.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  CKV94_RS00170 (SAMEA4412678_00034) - 34803..35198 (+) 396 WP_003822902.1 CrcB family protein -
  CKV94_RS00175 (SAMEA4412678_00035) argS 35241..36959 (+) 1719 WP_003822904.1 arginine--tRNA ligase -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 25516.30 Da        Isoelectric Point: 6.5880

>NTDB_id=1032010 CKV94_RS00155 WP_003822898.1 32643..33344(-) (radC) [Eikenella corrodens strain NCTC10596]
MGIKHWPENERPREKLLHRGAGALSDAELLAILLRVGTQGMSAVDLARYLLQEFGSLNRLLSAPAAELTMHKGMGEAAYC
QFAVVREIGRRLLAEEMRDTPAFNSPDAVANYLVLQLAHEPVEVSVAMLLSSSHKLIAFQELSRGTVAENTVYIREVAKL
ALRYHAASLIIAHNHPGGSTEPSSADLAFTRRLQQALALLDVRLLDHFIVAGNRAVSFAANGWMRELAEDVGD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=1032010 CKV94_RS00155 WP_003822898.1 32643..33344(-) (radC) [Eikenella corrodens strain NCTC10596]
ATGGGCATTAAACATTGGCCAGAAAACGAGCGGCCGCGCGAGAAACTGTTGCATCGCGGTGCGGGAGCATTAAGCGATGC
GGAACTGTTGGCCATCCTGTTGCGGGTAGGCACGCAGGGGATGAGTGCGGTGGATTTGGCGCGTTATCTGTTACAGGAAT
TTGGCTCACTCAACCGACTGCTTTCCGCACCTGCCGCCGAACTGACGATGCACAAGGGCATGGGCGAGGCGGCGTATTGC
CAGTTTGCCGTGGTACGAGAAATCGGCCGGCGCTTGTTGGCCGAGGAAATGCGCGATACACCCGCTTTCAATTCACCCGA
TGCGGTGGCCAATTATCTGGTGCTGCAACTGGCGCACGAGCCGGTGGAAGTGAGCGTGGCGATGCTGTTGAGCAGCAGTC
ATAAGTTGATTGCATTTCAGGAGCTGTCGCGCGGCACGGTGGCGGAAAACACGGTGTATATCCGCGAAGTGGCGAAGCTG
GCTCTGCGCTATCATGCCGCTTCGCTGATTATCGCGCACAACCATCCCGGTGGCTCGACTGAGCCTTCGTCAGCAGATTT
AGCCTTCACCCGACGATTGCAACAGGCATTGGCGCTGTTGGATGTACGGCTATTGGATCACTTTATCGTGGCGGGCAATC
GAGCGGTGTCGTTTGCCGCAAACGGGTGGATGCGGGAGTTGGCAGAGGATGTGGGAGATTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(103-222)

UPF0758 N-terminal (UPF0758_N)

(3-80)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

42.152

95.708

0.403