Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CKV96_RS13425 Genome accession   NZ_LT906476
Coordinates   2943312..2944103 (-) Length   263 a.a.
NCBI ID   WP_014842650.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11286     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2938312..2949103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV96_RS13415 (SAMEA4040027_02635) legS1 2939458..2940615 (-) 1158 WP_027224808.1 Dot/Icm T4SS effector LegS1 -
  CKV96_RS15795 (SAMEA4040027_02636) - 2940870..2941028 (+) 159 WP_172407113.1 hypothetical protein -
  CKV96_RS13420 (SAMEA4040027_02637) dacB 2941427..2943220 (-) 1794 WP_027224807.1 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase -
  CKV96_RS13425 (SAMEA4040027_02638) spo0J 2943312..2944103 (-) 792 WP_014842650.1 ParB/RepB/Spo0J family partition protein Regulator
  CKV96_RS13430 (SAMEA4040027_02639) ceg33 2944220..2944723 (-) 504 WP_027224806.1 Dot/Icm T4SS effector Ceg33 -
  CKV96_RS13435 (SAMEA4040027_02640) - 2944897..2945646 (-) 750 WP_027224805.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  CKV96_RS13440 (SAMEA4040027_02641) rsmB 2945643..2946926 (-) 1284 WP_027224804.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CKV96_RS13445 (SAMEA4040027_02642) fmt 2946923..2947867 (-) 945 WP_027224803.1 methionyl-tRNA formyltransferase -
  CKV96_RS13450 (SAMEA4040027_02643) def 2947864..2948376 (-) 513 WP_010948295.1 peptide deformylase -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30073.19 Da        Isoelectric Point: 5.9797

>NTDB_id=1031996 CKV96_RS13425 WP_014842650.1 2943312..2944103(-) (spo0J) [Legionella pneumophila strain NCTC11286]
MQTRFTYLPVTSLQAGQYQPRQDFNVTELQELAQSISSQGLIEPLVVRPIAKERYEIIAGERRWRAAKLAGLNEVPCLIG
DYSDQQACALTLIENIQRQDLNLIEEATGYKRLIEEFHYHQDEIAALVGKSRSHVANILRLLTLTDKVKQLVRDKVLSFG
HARVLVGLNPEQQEMFAHQVIGEEWSVRHLEQEIKSYKNKDTNSPKNPRKDRDIERLQTILAEQVGAPVQIVNDGEDGGW
LKVKFFDNDTLAGLLERLGLRYD

Nucleotide


Download         Length: 792 bp        

>NTDB_id=1031996 CKV96_RS13425 WP_014842650.1 2943312..2944103(-) (spo0J) [Legionella pneumophila strain NCTC11286]
ATGCAAACCCGATTTACTTATTTACCTGTTACAAGCCTGCAGGCAGGTCAGTATCAACCCAGGCAAGATTTTAATGTAAC
GGAGTTACAGGAATTGGCTCAGTCAATTTCTTCCCAGGGTTTAATTGAACCCTTGGTGGTAAGACCCATAGCAAAAGAGC
GATATGAAATTATTGCGGGGGAAAGAAGGTGGCGTGCGGCCAAATTGGCGGGATTAAATGAAGTCCCTTGTTTGATTGGA
GATTATAGTGATCAACAGGCATGTGCTCTCACTTTAATCGAAAATATTCAACGTCAGGATTTGAATTTAATCGAGGAAGC
CACTGGTTATAAGCGTTTAATTGAAGAATTCCATTATCATCAGGACGAGATCGCAGCGTTGGTAGGTAAATCTCGTAGCC
ATGTCGCAAATATTCTTCGTCTCCTTACCTTGACAGATAAGGTTAAACAGTTGGTTCGAGACAAAGTATTATCCTTTGGC
CATGCTCGTGTATTGGTTGGCTTAAATCCTGAACAGCAAGAAATGTTTGCTCACCAGGTTATTGGAGAGGAATGGTCTGT
CAGACACTTAGAGCAAGAAATTAAATCTTATAAAAATAAAGATACGAACAGTCCCAAAAATCCCAGAAAAGACAGAGATA
TTGAGCGGTTACAGACTATCCTGGCTGAACAAGTGGGGGCTCCTGTACAAATTGTAAACGATGGCGAAGACGGAGGTTGG
TTAAAAGTAAAATTTTTTGATAATGATACCCTTGCAGGGCTTTTGGAGCGATTGGGCTTGAGATATGATTAG

Domains

Predicted by InterProScan.

ParB/Sulfiredoxin domain (ParB_N)

(7-96)

HTH domain found in ParB protein (HTH_ParB)

(146-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

37.308

98.859

0.369

Multiple sequence alignment