Detailed information    

insolico Bioinformatically predicted

Overview

Name   lpp1978   Type   Machinery gene
Locus tag   CKV96_RS10080 Genome accession   NZ_LT906476
Coordinates   2213576..2213890 (-) Length   104 a.a.
NCBI ID   WP_027224483.1    Uniprot ID   -
Organism   Legionella pneumophila strain NCTC11286     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2208576..2218890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV96_RS10055 (SAMEA4040027_01988) - 2209002..2209502 (-) 501 WP_014844283.1 hypothetical protein -
  CKV96_RS10060 (SAMEA4040027_01989) - 2209994..2210854 (+) 861 WP_014844284.1 polysaccharide deacetylase family protein -
  CKV96_RS10065 (SAMEA4040027_01990) - 2210971..2212167 (-) 1197 WP_027224485.1 murein transglycosylase A -
  CKV96_RS10070 (SAMEA4040027_01991) lpp1976 2212277..2212834 (-) 558 WP_027224484.1 hypothetical protein Machinery gene
  CKV96_RS10075 (SAMEA4040027_01992) lpp1977 2212831..2213637 (-) 807 WP_050598156.1 PilW family protein Machinery gene
  CKV96_RS10080 (SAMEA4040027_01993) lpp1978 2213576..2213890 (-) 315 WP_027224483.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  CKV96_RS10085 (SAMEA4040027_01994) hisC 2214050..2215159 (+) 1110 WP_014844289.1 histidinol-phosphate transaminase -
  CKV96_RS10090 (SAMEA4040027_01995) - 2215196..2215537 (+) 342 WP_010947715.1 4a-hydroxytetrahydrobiopterin dehydratase -
  CKV96_RS10095 (SAMEA4040027_01996) secF 2215726..2216643 (-) 918 WP_010947716.1 protein translocase subunit SecF -
  CKV96_RS10100 (SAMEA4040027_01997) secD 2216656..2218512 (-) 1857 WP_011214250.1 protein translocase subunit SecD -
  CKV96_RS10105 (SAMEA4040027_01998) yajC 2218534..2218869 (-) 336 WP_010947718.1 preprotein translocase subunit YajC -

Sequence

Protein


Download         Length: 104 a.a.        Molecular weight: 12263.42 Da        Isoelectric Point: 10.0591

>NTDB_id=1031986 CKV96_RS10080 WP_027224483.1 2213576..2213890(-) (lpp1978) [Legionella pneumophila strain NCTC11286]
MSKHKGFTLMEVLVSLMLMTTVVLMLVEQQLKTRDLINHLIWRIQGSQYLDQVDEALYISENRLPLPPSNYHFDIRRSQK
KIILNVTWFKKSQSIIRTYDLGAN

Nucleotide


Download         Length: 315 bp        

>NTDB_id=1031986 CKV96_RS10080 WP_027224483.1 2213576..2213890(-) (lpp1978) [Legionella pneumophila strain NCTC11286]
ATGAGCAAGCATAAGGGTTTTACTCTAATGGAAGTACTTGTGTCATTAATGCTAATGACAACGGTAGTTCTGATGTTAGT
GGAACAACAGTTGAAAACCAGAGATCTAATCAATCATCTTATCTGGCGAATCCAAGGTTCCCAATATCTAGATCAAGTAG
ATGAAGCATTATATATTAGTGAGAATAGACTCCCTCTGCCGCCTTCAAATTATCATTTTGATATCAGGCGATCTCAAAAG
AAAATCATTTTGAATGTTACGTGGTTTAAAAAAAGCCAGTCAATTATTCGCACCTATGATCTGGGTGCTAATTGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lpp1978 Legionella pneumophila strain ERS1305867

99.038

100

0.99
  lpp1978 Legionella pneumophila str. Paris

97.115

100

0.971