Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   CKV98_RS23190 Genome accession   NZ_LT906474
Coordinates   4570495..4571472 (-) Length   325 a.a.
NCBI ID   WP_095119548.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC122     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4565495..4576472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV98_RS23180 (SAMEA4364219_04386) yieP 4568387..4569079 (+) 693 WP_001131164.1 FadR/GntR family transcriptional regulator -
  CKV98_RS23185 (SAMEA4364219_04387) mdtD 4569102..4570529 (+) 1428 WP_001280852.1 multidrug transporter subunit MdtD -
  CKV98_RS23190 (SAMEA4364219_04388) cytR 4570495..4571472 (-) 978 WP_095119548.1 ribose operon transcriptional repressor RbsR Regulator
  CKV98_RS23195 (SAMEA4364219_04389) rbsK 4571476..4572405 (-) 930 WP_001300603.1 ribokinase -
  CKV98_RS23200 (SAMEA4364219_04390) rbsB 4572531..4573421 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  CKV98_RS23205 (SAMEA4364219_04391) rbsC 4573446..4574411 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  CKV98_RS23210 (SAMEA4364219_04392) rbsA 4574416..4575921 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  CKV98_RS23215 (SAMEA4364219_04393) rbsD 4575929..4576348 (-) 420 WP_001301979.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 35989.21 Da        Isoelectric Point: 5.2018

>NTDB_id=1031889 CKV98_RS23190 WP_095119548.1 4570495..4571472(-) (cytR) [Escherichia coli strain NCTC122]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDNSLLGG
DLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQAVFTG
NDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRITQPTLQQQRLQLTPILM
ERGSA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=1031889 CKV98_RS23190 WP_095119548.1 4570495..4571472(-) (cytR) [Escherichia coli strain NCTC122]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATCACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCGGTTATAGTCTCGTCCTTTGCAATACCGAAGGCGATGAACAGCGGATGAATCGCAATCTGGAAACGCTGAT
GCAAAAACGCGTTGATGGCTTGCTGTTACTGTGCACCGAAACGCATCAACCTTCGCGTGAAATCATGCAACGTTATCCGA
CAGTGCCTACTGTGATGATGGACTGGGCTCCGTTCGATGGCGACAGCGATCTTATTCAGGATAACTCGTTGCTGGGCGGA
GACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGCCCGCTGGATAAAACTCCGGC
GCGCCTGCGGTTGGAAGGTTATCGGGCGGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCTATGAAGTCACTGGTG
ATTTTGAATTTAACGGCGGGTTTGACGCTATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAGGCCGTCTTTACCGGA
AATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGATATCGCGGTGATTGG
CTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCACCAACCGAAAGATGAACTGGGGGAGC
TGGCGATTGATGTACTCATCCATCGGATAACCCAGCCGACCCTTCAGCAACAACGATTACAACTTACTCCGATTCTGATG
GAACGCGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(3-48)

Periplasmic binding protein-like domain (Peripla_BP_3)

(164-324)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

36.747

100

0.375
  cytR Vibrio cholerae C6706

38.762

94.462

0.366

Multiple sequence alignment