Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CKV98_RS18550 Genome accession   NZ_LT906474
Coordinates   3642232..3642708 (+) Length   158 a.a.
NCBI ID   WP_000811693.1    Uniprot ID   A0AA91EE93
Organism   Escherichia coli strain NCTC122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3637232..3647708
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV98_RS18510 (SAMEA4364219_03483) - 3637440..3638303 (+) 864 WP_081508865.1 GTPase family protein -
  CKV98_RS18515 (SAMEA4364219_03484) - 3638395..3639216 (+) 822 WP_000197388.1 DUF932 domain-containing protein -
  CKV98_RS18520 (SAMEA4364219_03485) yfjR 3639433..3640134 (+) 702 WP_000189411.1 WYL domain-containing protein -
  CKV98_RS18525 (SAMEA4364219_03486) ypjK 3640175..3640411 (+) 237 WP_001144031.1 protein YpjK -
  CKV98_RS18530 (SAMEA4364219_03487) yafY 3640411..3640854 (+) 444 WP_000649865.1 YfjS/YafY family lipoprotein -
  CKV98_RS18535 (SAMEA4364219_03488) ykfB 3640877..3641344 (+) 468 WP_001385283.1 protein YkfB -
  CKV98_RS18540 (SAMEA4364219_03489) ykfF 3641421..3641660 (+) 240 WP_000194654.1 DUF905 domain-containing protein -
  CKV98_RS18545 (SAMEA4364219_03490) yafX 3641758..3642216 (+) 459 WP_000211838.1 antirestriction protein -
  CKV98_RS18550 (SAMEA4364219_03491) radC 3642232..3642708 (+) 477 WP_000811693.1 RadC family protein Machinery gene
  CKV98_RS18555 (SAMEA4364219_03492) ykfH 3642717..3642938 (+) 222 WP_000691994.1 DUF987 domain-containing protein -
  CKV98_RS18560 (SAMEA4364219_03493) yafW 3642957..3643274 (+) 318 WP_000070396.1 type IV toxin-antitoxin system antitoxin YafW -
  CKV98_RS18565 (SAMEA4364219_03494) ykfI 3643295..3643636 (+) 342 WP_000854680.1 type IV toxin-antitoxin system toxin YkfI -
  CKV98_RS18575 (SAMEA4364219_03497) proA 3644208..3645461 (-) 1254 WP_000893272.1 glutamate-5-semialdehyde dehydrogenase -
  CKV98_RS18580 (SAMEA4364219_03498) proB 3645473..3646576 (-) 1104 WP_001285288.1 glutamate 5-kinase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 18098.78 Da        Isoelectric Point: 8.7508

>NTDB_id=1031870 CKV98_RS18550 WP_000811693.1 3642232..3642708(+) (radC) [Escherichia coli strain NCTC122]
MKQLSFLPGEMTPQDRRLIQRALRALDRHLHEPGVAFTSTHAVREWLRLHMAALEREEFRVLYLDNQNQLIAHETLFTGT
INRTEVHPREVVKRALHFNAAAVILAHNHPSGETTPSQADKTLTQRLVQVLQLVDIRVPDHLIVGGRQIYSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1031870 CKV98_RS18550 WP_000811693.1 3642232..3642708(+) (radC) [Escherichia coli strain NCTC122]
ATGAAACAGCTTTCCTTTTTACCCGGCGAGATGACGCCACAGGACCGGCGTCTCATTCAGCGGGCGCTCAGGGCTCTGGA
CCGCCACCTGCATGAGCCCGGCGTAGCCTTCACCTCTACCCACGCCGTACGTGAATGGCTGCGACTGCATATGGCCGCGC
TTGAGCGGGAAGAGTTCCGGGTGTTGTATCTGGACAACCAGAATCAGTTGATTGCCCATGAAACGCTCTTCACCGGCACG
ATTAACCGCACCGAGGTGCATCCCCGGGAGGTGGTCAAACGTGCTCTGCACTTCAACGCGGCGGCGGTGATACTCGCGCA
TAACCATCCTTCCGGCGAGACGACACCTAGCCAGGCCGACAAAACCCTCACGCAGCGACTGGTTCAGGTGCTTCAGCTGG
TGGATATCCGTGTCCCTGACCATCTGATTGTCGGTGGCAGGCAAATCTATTCGTTCGCAGAACACGGTCTGCTTTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA91EE93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

57.692

65.823

0.38