Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CKV98_RS17150 Genome accession   NZ_LT906474
Coordinates   3378960..3379565 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain NCTC122     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3373960..3384565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV98_RS17125 (SAMEA4364219_03238) aes 3373997..3374956 (+) 960 WP_047402716.1 acetyl esterase -
  CKV98_RS17130 (SAMEA4364219_03239) hemH 3374953..3375915 (-) 963 WP_001250105.1 ferrochelatase -
  CKV98_RS17135 (SAMEA4364219_03240) adk 3376151..3376795 (-) 645 WP_001220233.1 adenylate kinase -
  CKV98_RS17145 (SAMEA4364219_03241) htpG 3376976..3378850 (-) 1875 WP_000678201.1 molecular chaperone HtpG -
  CKV98_RS17150 (SAMEA4364219_03242) recR 3378960..3379565 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  CKV98_RS17155 (SAMEA4364219_03243) ybaB 3379565..3379894 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  CKV98_RS17160 dnaX 3379947..3381878 (-) 1932 WP_000122023.1 DNA polymerase III subunit gamma/tau -
  CKV98_RS17165 (SAMEA4364219_03245) apt 3382007..3382558 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  CKV98_RS17175 (SAMEA4364219_03246) ybaN 3382711..3383088 (-) 378 WP_001188905.1 DUF454 family protein -
  CKV98_RS17180 (SAMEA4364219_03247) priC 3383158..3383685 (+) 528 WP_000844876.1 primosomal replication protein N'' -
  CKV98_RS17185 (SAMEA4364219_03248) rsmS 3383699..3383860 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=1031864 CKV98_RS17150 WP_001195025.1 3378960..3379565(-) (recR) [Escherichia coli strain NCTC122]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=1031864 CKV98_RS17150 WP_001195025.1 3378960..3379565(-) (recR) [Escherichia coli strain NCTC122]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443