Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CKV98_RS09095 Genome accession   NZ_LT906474
Coordinates   1825394..1825870 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain NCTC122     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1820394..1830870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV98_RS09050 (SAMEA4364219_01725) sbmC 1820887..1821360 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  CKV98_RS09055 (SAMEA4364219_01726) yeeA 1821558..1822616 (+) 1059 WP_001200905.1 FUSC family protein -
  CKV98_RS09060 (SAMEA4364219_01727) tmaR 1822788..1823117 (+) 330 WP_000450409.1 DUF496 family protein -
  CKV98_RS09065 (SAMEA4364219_01728) - 1823218..1823400 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  CKV98_RS09070 - 1823463..1823600 (+) 138 Protein_1670 transposase domain-containing protein -
  CKV98_RS23545 - 1823889..1823981 (-) 93 Protein_1671 DUF957 domain-containing protein -
  CKV98_RS09075 (SAMEA4364219_01729) yeeW 1824015..1824209 (-) 195 WP_000988600.1 DUF5983 family protein -
  CKV98_RS09080 (SAMEA4364219_01730) cbtA 1824206..1824579 (-) 374 Protein_1673 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CKV98_RS09085 (SAMEA4364219_01731) cbeA 1824668..1825036 (-) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CKV98_RS09090 (SAMEA4364219_01732) yeeT 1825110..1825331 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  CKV98_RS09095 (SAMEA4364219_01733) radC 1825394..1825870 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  CKV98_RS09100 - 1825886..1826035 (-) 150 Protein_1677 antirestriction protein -
  CKV98_RS23550 - 1826031..1826150 (-) 120 Protein_1678 IS5/IS1182 family transposase -
  CKV98_RS09105 (SAMEA4364219_01734) - 1826221..1826679 (-) 459 Protein_1679 hypothetical protein -
  CKV98_RS09110 (SAMEA4364219_01735) - 1826815..1827885 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  CKV98_RS23990 - 1827882..1827950 (-) 69 Protein_1681 YjcZ-like family protein -
  CKV98_RS09115 (SAMEA4364219_01736) - 1827942..1828949 (+) 1008 Protein_1682 transposase -
  CKV98_RS09120 - 1828959..1829448 (-) 490 Protein_1683 IS3 family transposase -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=1031845 CKV98_RS09095 WP_001186773.1 1825394..1825870(-) (radC) [Escherichia coli strain NCTC122]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=1031845 CKV98_RS09095 WP_001186773.1 1825394..1825870(-) (radC) [Escherichia coli strain NCTC122]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392