Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   AB8792_RS17545 Genome accession   NZ_CP165787
Coordinates   3567757..3568353 (-) Length   198 a.a.
NCBI ID   WP_012542296.1    Uniprot ID   A0A1F2LQD1
Organism   Klebsiella variicola strain kv240612_barcode19     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3562757..3573353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB8792_RS17530 helD 3562965..3565019 (-) 2055 WP_110242565.1 DNA helicase IV -
  AB8792_RS17535 - 3565144..3565590 (+) 447 WP_012542294.1 YccF domain-containing protein -
  AB8792_RS17540 yccS 3565608..3567743 (+) 2136 WP_008805895.1 YccS family putative transporter -
  AB8792_RS17545 sxy/tfoX 3567757..3568353 (-) 597 WP_012542296.1 TfoX/Sxy family DNA transformation protein Regulator
  AB8792_RS17550 sulA 3568704..3569213 (+) 510 WP_008805893.1 SOS-induced cell division inhibitor SulA -
  AB8792_RS17555 ompA 3569566..3570618 (+) 1053 WP_008805892.1 porin OmpA -
  AB8792_RS17560 matP 3570729..3571181 (-) 453 WP_012542298.1 macrodomain Ter protein MatP -
  AB8792_RS17565 - 3571367..3573124 (+) 1758 WP_012968609.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22631.12 Da        Isoelectric Point: 10.0610

>NTDB_id=1031788 AB8792_RS17545 WP_012542296.1 3567757..3568353(-) (sxy/tfoX) [Klebsiella variicola strain kv240612_barcode19]
MRKLVCPRFPQFQACVSPLGQLHSRPLFGGYSLAIDDTVFAMVAEGDIYLRACEQSAAYRVEHRNPLLTLRRHGRIVPMK
YYQIDDALWRDETQLFRLSLLSWQSAQREKNHRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQQAWQRLRENN
ASLSLNVLLALEGAIVGVHAAALPTLRRQELLEWAGAR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=1031788 AB8792_RS17545 WP_012542296.1 3567757..3568353(-) (sxy/tfoX) [Klebsiella variicola strain kv240612_barcode19]
ATGAGAAAACTAGTATGTCCGCGGTTCCCGCAATTTCAGGCCTGCGTCTCGCCGCTGGGTCAGTTACATTCTCGTCCGCT
TTTTGGCGGCTATAGCCTGGCCATTGATGATACGGTGTTTGCGATGGTGGCAGAGGGCGATATTTACCTGAGGGCCTGCG
AGCAGAGCGCCGCGTATCGGGTTGAACATCGCAATCCTTTATTAACGCTGCGCCGACATGGGCGCATCGTGCCGATGAAG
TATTATCAAATTGACGACGCATTGTGGCGCGATGAGACTCAGCTTTTTCGGCTGTCGCTGTTGTCGTGGCAGAGTGCGCA
GCGTGAAAAGAACCACCGACGGGCGTCGGGCCGTCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TCCACGCGGGCATACCGGATGTCAGGACGCTTCGGGAGGTAGGCGCTCAGCAGGCCTGGCAACGGCTACGAGAAAACAAC
GCCTCTCTGTCGCTCAATGTCTTGCTGGCGCTGGAGGGGGCGATTGTCGGCGTTCACGCCGCCGCGCTCCCGACGCTGCG
GCGTCAGGAGCTGCTCGAATGGGCTGGAGCCCGCTAG

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(16-105)

TfoX C-terminal domain (TfoX_C)

(117-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1F2LQD1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

50.761

99.495

0.505

Multiple sequence alignment