Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AB7T04_RS10285 Genome accession   NZ_CP165780
Coordinates   2116668..2117276 (+) Length   202 a.a.
NCBI ID   WP_003153521.1    Uniprot ID   -
Organism   Bacillus velezensis strain L-15     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2111668..2122276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB7T04_RS10245 (AB7T04_10245) - 2112721..2113227 (-) 507 WP_012117833.1 PTS glucose transporter subunit IIA -
  AB7T04_RS10250 (AB7T04_10250) - 2113366..2113779 (+) 414 WP_070082015.1 Hsp20/alpha crystallin family protein -
  AB7T04_RS10255 (AB7T04_10255) - 2113809..2114243 (-) 435 WP_101562217.1 YppG family protein -
  AB7T04_RS10260 (AB7T04_10260) - 2114430..2114612 (+) 183 WP_003153532.1 YppF family protein -
  AB7T04_RS10265 (AB7T04_10265) - 2114651..2115019 (-) 369 WP_003153529.1 YppE family protein -
  AB7T04_RS10270 (AB7T04_10270) - 2115065..2115310 (-) 246 WP_039063257.1 DUF5446 family protein -
  AB7T04_RS10275 (AB7T04_10275) sspM 2115516..2115620 (+) 105 WP_003153525.1 acid-soluble spore protein SspM -
  AB7T04_RS10280 (AB7T04_10280) - 2115664..2116626 (-) 963 WP_101562218.1 DUF2515 domain-containing protein -
  AB7T04_RS10285 (AB7T04_10285) recU 2116668..2117276 (+) 609 WP_003153521.1 Holliday junction resolvase RecU Machinery gene
  AB7T04_RS10290 (AB7T04_10290) - 2117315..2120098 (+) 2784 WP_101562219.1 PBP1A family penicillin-binding protein -
  AB7T04_RS10295 (AB7T04_10295) - 2120176..2120667 (-) 492 WP_101562220.1 YpoC family protein -
  AB7T04_RS10300 (AB7T04_10300) nth 2120664..2121323 (-) 660 WP_003153517.1 endonuclease III -
  AB7T04_RS10305 (AB7T04_10305) dnaD 2121342..2122040 (-) 699 WP_182068931.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23680.82 Da        Isoelectric Point: 9.6872

>NTDB_id=1031729 AB7T04_RS10285 WP_003153521.1 2116668..2117276(+) (recU) [Bacillus velezensis strain L-15]
MIRYPNGKTFQPNKTVSSQNSQKRSHSYSNRGMTLEDDLNETNKYYLANQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTAFPLQNFHDHQIEHMKQVVRQDGICFVIISAFGKVYFLEADKLFVFWERKE
KNGRKSIRKDELEDASFPISLGYSPRIDYISIIEQLYFSQEQ

Nucleotide


Download         Length: 609 bp        

>NTDB_id=1031729 AB7T04_RS10285 WP_003153521.1 2116668..2117276(+) (recU) [Bacillus velezensis strain L-15]
GTGATTCGGTACCCGAATGGAAAAACTTTTCAGCCGAACAAAACGGTTTCATCCCAAAACAGCCAGAAACGGTCTCATTC
ATACAGTAATCGCGGCATGACCCTCGAAGACGACCTGAATGAAACGAATAAGTATTATCTGGCTAACCAAATTGCTGTCA
TTCACAAAAAGCCGACACCCGTCCAGATTGTAAACGTCCACTATCCGAAAAGAAGCGCCGCAGTCATTAAGGAAGCTTAT
TTTAAACAGTCTTCAACAACTGACTACAACGGCATTTATAAAGGACGCTACATTGATTTCGAGGCAAAAGAAACAAAAAA
CAAAACGGCATTTCCCCTGCAGAATTTTCATGATCATCAGATTGAGCATATGAAGCAGGTGGTCAGGCAAGACGGCATTT
GTTTTGTTATTATATCCGCTTTCGGAAAGGTTTATTTCCTCGAAGCCGACAAGCTGTTTGTCTTTTGGGAGAGAAAGGAG
AAGAACGGCAGAAAATCAATTCGCAAAGACGAATTAGAAGATGCTTCCTTTCCGATTTCCCTTGGATACTCACCGAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCAGGAACAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

90.955

98.515

0.896

Multiple sequence alignment