Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CKV84_RS14730 Genome accession   NZ_LT906452
Coordinates   3209629..3210222 (+) Length   197 a.a.
NCBI ID   WP_011216607.1    Uniprot ID   Q5WT52
Organism   Legionella pneumophila strain NCTC11985     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3204629..3215222
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKV84_RS14695 - 3206102..3206391 (-) 290 Protein_2832 GIY-YIG nuclease family protein -
  CKV84_RS14700 (SAMEA4040028_02920) - 3206417..3206876 (-) 460 Protein_2833 hypothetical protein -
  CKV84_RS14720 (SAMEA4040028_02924) dnaX 3207578..3209248 (+) 1671 WP_014842778.1 DNA polymerase III subunit gamma/tau -
  CKV84_RS14725 (SAMEA4040028_02925) - 3209282..3209620 (+) 339 WP_010948445.1 YbaB/EbfC family nucleoid-associated protein -
  CKV84_RS14730 (SAMEA4040028_02926) recR 3209629..3210222 (+) 594 WP_011216607.1 recombination mediator RecR Machinery gene
  CKV84_RS14735 (SAMEA4040028_02927) - 3210215..3211075 (+) 861 WP_014842779.1 DUF547 domain-containing protein -
  CKV84_RS14740 (SAMEA4040028_02928) - 3211072..3213069 (+) 1998 WP_014842780.1 sulfatase-like hydrolase/transferase -
  CKV84_RS14745 (SAMEA4040028_02929) - 3213293..3214771 (-) 1479 WP_014842781.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21705.01 Da        Isoelectric Point: 6.6782

>NTDB_id=1031679 CKV84_RS14730 WP_011216607.1 3209629..3210222(+) (recR) [Legionella pneumophila strain NCTC11985]
MDALSRLVEALRCLPGVGPKSAQRMVFHLLQHQRQRGLHLASCLEQAMKHISHCQQCNNYTEQTLCTLCQNPNRDSTLLC
VVESPADVSAIEQSNSFQGKYFVLMGKISPLDGLGPDDIGLPKLKELIIREKIQEVILALSPSVESQTTIHFIHQLLKDE
TVNISQLAHGIPSGGELEFLDGNTISSALKNRAVINV

Nucleotide


Download         Length: 594 bp        

>NTDB_id=1031679 CKV84_RS14730 WP_011216607.1 3209629..3210222(+) (recR) [Legionella pneumophila strain NCTC11985]
ATGGATGCTCTAAGCCGCTTGGTAGAGGCGCTTCGCTGTCTTCCCGGTGTGGGACCAAAATCAGCACAAAGGATGGTGTT
CCATTTATTGCAGCACCAAAGACAGCGAGGTTTACACCTTGCCTCCTGTTTGGAACAGGCAATGAAACACATTAGTCATT
GCCAGCAGTGTAATAATTACACTGAACAAACTCTGTGTACTCTTTGCCAAAACCCCAATCGAGATTCAACATTACTTTGC
GTGGTAGAGAGTCCAGCGGATGTTTCTGCCATAGAACAAAGCAATTCCTTTCAAGGTAAATATTTTGTCCTTATGGGAAA
AATTTCTCCTCTTGATGGCTTGGGGCCTGATGACATAGGTCTACCGAAACTTAAAGAGTTAATTATTAGGGAAAAAATTC
AGGAAGTTATTCTTGCATTAAGCCCCAGTGTTGAAAGCCAGACCACAATTCATTTTATTCATCAGTTGCTAAAGGATGAA
ACCGTCAATATCAGCCAGTTAGCACATGGAATACCATCAGGTGGTGAATTAGAATTTTTAGATGGGAATACTATAAGCAG
TGCCCTTAAGAACAGAGCTGTGATTAATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-168)

RecR protein (RecR_ZnF)

(38-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5WT52

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

40.513

98.985

0.401
  recR Bacillus subtilis subsp. subtilis str. 168

39.267

96.954

0.381